Non-Coding RNA Search

Ss1.1-Pig4-TMW8060O20.3

Sequence:


               
               GCGAGAGTGAGCCAAGCGGCCGCTTAGCCCCTGGCGCCTCGTGATCAAGGCCGTCAGTCG
GGGGTTCGCGGGTGGGCGATCACCCTCGGCTCCAGGCACAGCACCGGGCGAGCGGCGATA
ACCGGTCCATGGCTACTACGTCGGCTCCGTCATCCTTGGCCCTGAGGGGCCCGACCCAGG
CCGTGGCCCCCAGCTCGTACGGCGTCTTCTGCAAGGGGCTCTCCCGCACCCTGCTTGCTT
TCTTCGAGCTGGCCTGGCAGCTGCGCATGAACTTCCCCTACTTCTACATCGCGGGCTCCG
TGGTCCTCAACATCCGCTTGCAGGTACACTTCTAGAGCCCTGAGTAAGCAGCCAGTACCA
CCGGCCTGCATGATGGCCGACTCCCAGGCGCCTCCGCGGCGCGGCGGAGCTGAGGGCGAG
GAGCCCCGGTATCTCGCGAGAGTGCCTGGCCACGGTCGGGGCTGCGCTCTCCGCTTTCAG
CCCGTCTCCCTAACTGCGTCTGCCTCCAAAGCGCTGGCGAAACGAGGAAGAGGTACGCGA
CTCCAGGAATAGAAAACTTCAGTTAAGACCCACGACGGTGTTTAAGAAGCTGTGCGTCTT
TAAAACAAACGAGACAAGCAAGATGCGTTATAAAAAGGGAAGGCTACTAAGAGACTGGAT
TATAAACAGGACATTGAATGACTTACAAGCTTAAGATTTTAAGACTATAACGTGCAGGCA
TAGGTTTTCTTTATCCCACAAAAGAAAACACATCATCAGAAACTTTCAGTGAGGGAGTTT
CCTGGTTGACTAGTGGTTAGGATTTGCTGCTTTCACCGCTCCTGTGGCTGGAGTTCAATC
CCTGGTCCTAGAACCGAGATCCTACATCAAGCCCTGCAAGCTGTGGCCAAAAAGAAAAGA
TACTTTTATTAAAACAACAACAAAACAAACTGTACAGGAAATGCATCCTTCAGATACCAA
ACAATGTAAAGTGCAGCAAGATTTGGATCAGAGGGTTGGAGTGTAAGAAAGTGGCTTCCA
TTTCAATGTCCCTATAAGTAGCATGCAGTTCAAAGACCTTGGAGCCAAAGAGAAGGAAAT
CCAGGCATAGCACAAAGCTTGGCGATTTATTGAATAGCATTTAAATAATGTAAATGCTAT
TTATGTTCTTCATCTTTTTAAAAGGATACTTAATTATGGTTACAAAGTTGAATGCAAGTG
TTGTCAGCCTTAATGGTGTAAAAGCAGTTTCCAGTGAGGATGGAGGGAGGAGGTACATGG
AATGGTGGTGGAGTCCTTATAAAATGGAAAGTTGGGAGATACCGTCTGTTGTTGATGGGG
AAGAGGGCATTTTATTAATTAAGCAATAGCCATGAAGTTGCTAAAAATAATTATGAAAGA
GGAAAAGAGAGGGAAACAGCATGAAGTCAACAAGAAATGCCTAAAGATGACAGTTCTGGT
GGTATGTCTCAAAAAGAAAAACATGCATTACCTGATGTGTTTGAATATAGAATCAAGAGA
TTTTTGGTATTTAGAGAGTCTGGAGATAATTTAGTTGTCTGTAGATTTTTTTAAATTAGG
CACAAAGCTGAGTAATTATGAACCCCCAGAAAACGTAAGATGTTGTTTAAAAACTATTCT
GCATAATTCAACTGTGAATAGTATTAGTTATATAACATCAGTCATAATTATGTAAATGCT
GAAAATATAATGTAACAAATTATTAGGTAACATTGGGGAGATTGGAGAGGAGATGTATGC
ATAATGAGGGAGAATCAATCAAGATCTAATCAGAAAAGTTGATAAAAAGGTAATATAAAC
ATGTTACTTAGAAAAAAGTACAATAAGGACCACCTAAGAGTTAAAAGTGATTGTCTCTGG
AGAAAGAAAATCAGGGATGGGCAGAGAAAATGTGGAGGATTGCTGTTTTCCATTACCAGT
CTAACAGTATTATTTGATTTTTCTTGATTTTTCTTATCCATCTATATATTTTCTTTGATT
AAAAAATAATTTGAATTTCATTTTTAAAAGTCCTCCAGGTAATCGAAATGTACACCAGTG
GTTAAGAGCACCAGAGTAAAAGTTTTTAAATCAGACAGACGTCTGTTAAAATGCAAACAA
ATTTTGTGGAGGCCATTGATCTTGTCTAAACTTCAGTTTCCTCAGTTCTATCAAATGAGA
GTAAAAATACTCATCTTGAAAAATCAGCCTGAGAATTAAAAATAAACCTGACTTAGTGCT
TGATGTATACACAATAAACAGTGTTTGTCATTACAGCATATCTCATTAACGTGTGAATAA
AACTTAAAATTCTCAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGAGAGTGAGCCAAGCGGCCGCTTAGCCCCTGGCGCCTCGTGATCAAGGCCGTCAGTCG
GGGGTTCGCGGGTGGGCGATCACCCTCGGCTCCAGGCACAGCACCGGGCGAGCGGCGATA
ACCGGTCCATGGCTACTACGTCGGCTCCGTCATCCTTGGCCCTGAGGGGCCCGACCCAGG
CCGTGGCCCCCAGCTCGTACGGCGTCTTCTGCAAGGGGCTCTCCCGCACCCTGCTTGCTT
TCTTCGAGCTGGCCTGGCAGCTGCGCATGAACTTCCCCTACTTCTACATCGCGGGCTCCG
TGGTCCTCAACATCCGCTTGCAGGTACACTTCTAGAGCCCTGAGTAAGCAGCCAGTACCA
CCGGCCTGCATGATGGCCGACTCCCAGGCGCCTCCGCGGCGCGGCGGAGCTGAGGGCGAG
GAGCCCCGGTATCTCGCGAGAGTGCCTGGCCACGGTCGGGGCTGCGCTCTCCGCTTTCAG
CCCGTCTCCCTAACTGCGTCTGCCTCCAAAGCGCTGGCGAAACGAGGAAGAGGTACGCGA
CTCCAGGAATAGAAAACTTCAGTTAAGACCCACGACGGTGTTTAAGAAGCTGTGCGTCTT
TAAAACAAACGAGACAAGCAAGATGCGTTATAAAAAGGGAAGGCTACTAAGAGACTGGAT
TATAAACAGGACATTGAATGACTTACAAGCTTAAGATTTTAAGACTATAACGTGCAGGCA
TAGGTTTTCTTTATCCCACAAAAGAAAACACATCATCAGAAACTTTCAGTGAGGGAGTTT
CCTGGTTGACTAGTGGTTAGGATTTGCTGCTTTCACCGCTCCTGTGGCTGGAGTTCAATC
CCTGGTCCTAGAACCGAGATCCTACATCAAGCCCTGCAAGCTGTGGCCAAAAAGAAAAGA
TACTTTTATTAAAACAACAACAAAACAAACTGTACAGGAAATGCATCCTTCAGATACCAA
ACAATGTAAAGTGCAGCAAGATTTGGATCAGAGGGTTGGAGTGTAAGAAAGTGGCTTCCA
TTTCAATGTCCCTATAAGTAGCATGCAGTTCAAAGACCTTGGAGCCAAAGAGAAGGAAAT
CCAGGCATAGCACAAAGCTTGGCGATTTATTGAATAGCATTTAAATAATGTAAATGCTAT
TTATGTTCTTCATCTTTTTAAAAGGATACTTAATTATGGTTACAAAGTTGAATGCAAGTG
TTGTCAGCCTTAATGGTGTAAAAGCAGTTTCCAGTGAGGATGGAGGGAGGAGGTACATGG
AATGGTGGTGGAGTCCTTATAAAATGGAAAGTTGGGAGATACCGTCTGTTGTTGATGGGG
AAGAGGGCATTTTATTAATTAAGCAATAGCCATGAAGTTGCTAAAAATAATTATGAAAGA
GGAAAAGAGAGGGAAACAGCATGAAGTCAACAAGAAATGCCTAAAGATGACAGTTCTGGT
GGTATGTCTCAAAAAGAAAAACATGCATTACCTGATGTGTTTGAATATAGAATCAAGAGA
TTTTTGGTATTTAGAGAGTCTGGAGATAATTTAGTTGTCTGTAGATTTTTTTAAATTAGG
CACAAAGCTGAGTAATTATGAACCCCCAGAAAACGTAAGATGTTGTTTAAAAACTATTCT
GCATAATTCAACTGTGAATAGTATTAGTTATATAACATCAGTCATAATTATGTAAATGCT
GAAAATATAATGTAACAAATTATTAGGTAACATTGGGGAGATTGGAGAGGAGATGTATGC
ATAATGAGGGAGAATCAATCAAGATCTAATCAGAAAAGTTGATAAAAAGGTAATATAAAC
ATGTTACTTAGAAAAAAGTACAATAAGGACCACCTAAGAGTTAAAAGTGATTGTCTCTGG
AGAAAGAAAATCAGGGATGGGCAGAGAAAATGTGGAGGATTGCTGTTTTCCATTACCAGT
CTAACAGTATTATTTGATTTTTCTTGATTTTTCTTATCCATCTATATATTTTCTTTGATT
AAAAAATAATTTGAATTTCATTTTTAAAAGTCCTCCAGGTAATCGAAATGTACACCAGTG
GTTAAGAGCACCAGAGTAAAAGTTTTTAAATCAGACAGACGTCTGTTAAAATGCAAACAA
ATTTTGTGGAGGCCATTGATCTTGTCTAAACTTCAGTTTCCTCAGTTCTATCAAATGAGA
GTAAAAATACTCATCTTGAAAAATCAGCCTGAGAATTAAAAATAAACCTGACTTAGTGCT
TGATGTATACACAATAAACAGTGTTTGTCATTACAGCATATCTCATTAACGTGTGAATAA
AACTTAAAATTCTCAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|42558268|ref|NP_976051.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|42558268|ref|NP_976051.1|

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               1-572, gnl|bosTau2|chr18 (39497360-39496802)
               

               
               1-572, gnl|Hg17|chr12 (11215103-11215651)
               


               
               898-1945, gnl|bosTau2|chr2 (16350911-16349842)
               

               
               898-1945, gnl|Hg17|chr12_random (148573-149599)
               

               
               898-1945, gnl|Mm7|chr6 (133149170-133150211)
               


               
               911-1129, gnl|bosTau2|chr18 (39495887-39495669)
               

               
               911-1129, gnl|Hg17|chr12 (11215933-11216128)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-572, gnl|bosTau2|chr18 (39497360-39496802)
               

               
               1-572, gnl|Hg17|chr12 (11215103-11215651)
               


               
               898-1945, gnl|bosTau2|chr2 (16350911-16349842)
               

               
               898-1945, gnl|Hg17|chr12_random (148573-149599)
               

               
               898-1945, gnl|Mm7|chr6 (133149170-133150211)
               


               
               911-1129, gnl|bosTau2|chr18 (39495887-39495669)
               

               
               911-1129, gnl|Hg17|chr12 (11215933-11216128)

Expressed library(ies): 39 entry(ies)

More info

Expressed library(ies): 39 entry(ies)

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               ret (0.7724)
               

               
               tra (0.61546)
               

               
               clu (0.598229)
               

               
               lyg (0.532411)
               

               
               kid (0.518941)
               

               
               sug (0.509165)
               

               
               spc (0.453463)
               

               
               pla (0.401016)
               

               
               aor (0.390549)
               

               
               sag (0.36543)
               

               
               nje (0.33184)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               cty (0.31224)
               

               
               tbr (0.308356)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (0.7724)
               

               
               tra (0.61546)
               

               
               clu (0.598229)
               

               
               lyg (0.532411)
               

               
               kid (0.518941)
               

               
               sug (0.509165)
               

               
               spc (0.453463)
               

               
               pla (0.401016)
               

               
               aor (0.390549)
               

               
               sag (0.36543)
               

               
               nje (0.33184)
               

               
               mga (0.32041)
               

               
               fco (0.314416)
               

               
               cty (0.31224)
               

               
               tbr (0.308356)
               

               
               isp (0.300752)
               

               
               bfe (0.299715)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               col (0.195008)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               spl (0.143184)
               

               
               pty (0.142714)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1-572, gnl\|bosTau2\|chr18 (39497360-39496802)
	1-572, gnl\|Hg17\|chr12 (11215103-11215651)

	898-1945, gnl\|bosTau2\|chr2 (16350911-16349842)
	898-1945, gnl\|Hg17\|chr12_random (148573-149599)
	898-1945, gnl\|Mm7\|chr6 (133149170-133150211)

	911-1129, gnl\|bosTau2\|chr18 (39495887-39495669)
	911-1129, gnl\|Hg17\|chr12 (11215933-11216128)

	ret (0.7724)
	tra (0.61546)
	clu (0.598229)
	lyg (0.532411)
	kid (0.518941)
	sug (0.509165)
	spc (0.453463)
	pla (0.401016)
	aor (0.390549)
	sag (0.36543)
	nje (0.33184)
	mga (0.32041)
	fco (0.314416)
	cty (0.31224)
	tbr (0.308356)
	isp (0.300752)
	bfe (0.299715)
	liv (0.292569)
	lin (0.291206)
	mgp (0.230681)
	tes (0.207814)
	hea (0.204499)
	col (0.195008)
	gul (0.177588)
	fty (0.17584)
	sin (0.174948)
	nco (0.161734)
	eli (0.151814)
	spl (0.143184)
	pty (0.142714)
	ssp (0.13552)
	ste (0.135208)
	ova (0.129132)
	ese (0.126502)
	bla (0.124347)
	eep (0.122564)
	jca (0.11396)
	eje (0.0988338)
	ldo (0.0970026)