Non-Coding RNA Search

Ss1.1-Pig4-TMW8060O22.5

Sequence:


               
               TTGGAATGTTGCGTCAGCAGGTAGAAGAACATGAAAAAGTCAAGCAAGAGATGGCCATGG
AGTATAAGCAGGAGTTAAAGAAACTACATGAAGAATTAGGCAGATTGAAGAGAAGCTATG
AAAAGCTACAGAAAAAGCATGTAAGAGATTTCAGAGGAAATACCAAAAATCACAGGGAAG
ATCGGTCTGAAATTGAGAGGTTAACTGGAAAAATAGAGGTATGTTCATAGCACTAATTTG
TTCTTAGTGATTGTCAGAGTTCATGTAGGAAAATCCTGTTTCTAATAGTGCTATTTCCTG
AAACCAGTTTTCTTCCATCTCCAGGACTATCACAGCTATTTCAAAGGTAGGATGGTGATC
CACTGTACATCTGGTTCCCTGTGGTTACTAGCTATCAGTAGTTCTCAGCGGGGCAGTAGC
ACCCTTTGAGGGCATTGGATGTGTATGGAAACATTGTTTCAAGTGTCAGAATGACTGGGA
GTGAAACTGGTATTATAGGGGACAGGGACTAGGGACTGTTGTACAATGGAAGGACTATTG
TACCCCAAATACCAATATGGAGGAACATTGGCCACCAGTTATTAGTCATTTCGTATAGGC
AGTGTCCTTATCTTATTGATCACCTAATATAGTAGGGACTTAGTAAGGGTTGAGGGTACA
TGGCTTTTTTGTACAGAGTACTCTGCATATCAGATTGTTTATCCTCAGAGTTCCTGTTAT
AGCTTAGCGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGAATGTTGCGTCAGCAGGTAGAAGAACATGAAAAAGTCAAGCAAGAGATGGCCATGG
AGTATAAGCAGGAGTTAAAGAAACTACATGAAGAATTAGGCAGATTGAAGAGAAGCTATG
AAAAGCTACAGAAAAAGCATGTAAGAGATTTCAGAGGAAATACCAAAAATCACAGGGAAG
ATCGGTCTGAAATTGAGAGGTTAACTGGAAAAATAGAGGTATGTTCATAGCACTAATTTG
TTCTTAGTGATTGTCAGAGTTCATGTAGGAAAATCCTGTTTCTAATAGTGCTATTTCCTG
AAACCAGTTTTCTTCCATCTCCAGGACTATCACAGCTATTTCAAAGGTAGGATGGTGATC
CACTGTACATCTGGTTCCCTGTGGTTACTAGCTATCAGTAGTTCTCAGCGGGGCAGTAGC
ACCCTTTGAGGGCATTGGATGTGTATGGAAACATTGTTTCAAGTGTCAGAATGACTGGGA
GTGAAACTGGTATTATAGGGGACAGGGACTAGGGACTGTTGTACAATGGAAGGACTATTG
TACCCCAAATACCAATATGGAGGAACATTGGCCACCAGTTATTAGTCATTTCGTATAGGC
AGTGTCCTTATCTTATTGATCACCTAATATAGTAGGGACTTAGTAAGGGTTGAGGGTACA
TGGCTTTTTTGTACAGAGTACTCTGCATATCAGATTGTTTATCCTCAGAGTTCCTGTTAT
AGCTTAGCGGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61873112|ref|XP_615998.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61873112|ref|XP_615998.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               215-333, + strand, RNAz p=0.537018

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               215-333, + strand, RNAz p=0.537018

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               96-708, gnl|bosTau2|chr1 (88281243-88281868)
               

               
               96-708, gnl|Hg17|chr3 (135734318-135734993)
               

               
               96-708, gnl|Mm7|chr9 (102304314-102303671)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-708, gnl|bosTau2|chr1 (88281243-88281868)
               

               
               96-708, gnl|Hg17|chr3 (135734318-135734993)
               

               
               96-708, gnl|Mm7|chr9 (102304314-102303671)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lyg (0.133103)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.133103)

	96-708, gnl\|bosTau2\|chr1 (88281243-88281868)
	96-708, gnl\|Hg17\|chr3 (135734318-135734993)
	96-708, gnl\|Mm7\|chr9 (102304314-102303671)