Non-Coding RNA Search

Ss1.1-Pig4-TMW8060P11.5

Sequence:


               
               ATAGGCGTGCTGCACGATGTTGCCCGAAATATTGGTGCGGGGGGCCCGGGTGGCCGCAGG
CAGGTTCCCTGGGCTGGGGTCTCGTCTTGTTGCCCGCTTTTCCCCACAGCGGACGCCCGA
GAACCGCCTGGTCATGCAGCGGAGCCTGCACGCGACGGTGTCCCGGGCTCTCCCGCTCAT
TCCCATCGTGGTGGAGCAGACGGGTCGCGGGGAGCGCGCTTATGACATCTACTCACGGCT
GCTGCGGGAGCGCATCGTGTGCGTCATGGGCCCAATTGACGACAGTGTTGCCAGCCTGGT
CATCGCACAGCTGCTTTTCCTGCAGTCTGAAAGCAACAAGAAGCCCATCCACATGTATAT
CAACAGCCCTGGTGGCGTGGTGACCTCGGGTCTGGCCATCTACGACACGATGCAGTACAT
CCTGAACCCCATCTGCACGTGGTGTGTGGGACAGGCCGCCAGCATGGGCTCCCTGCTTCT
GGCCGCAGGCACCCCGGGCATGCGCCACTCGCTCCCCAACTCCCGCATCATGATCCACCA
GCCCTCTGGGGGCGCCAGGGGCCAAGCCACAGACATTGCCATCCAGGCAGAGGAGATCAT
GAAACTCAAGAAGCAGCTCTACAGCATCTACGCCAAGCACACCAAGCAGAGCCTGCAGGT
GATTGAGTCGGCCATGGAGAGGGACCGCTACATGAGCCCCATGGAGGCCCAGGAGTTTGG
CATCTTAGACAAAGTCCTGGTCCACCCTCCCCAGGATGGTGAGGACGAGCCTGAGCTGGT
GCAGAAGGAGCCCGCGGCCGCGGCAACCACAGCAGAACCTGCCCCAGCAAGCACCTGAGA
GCCAGCCCTCACCCTCACCCTCACCCTCCGGAGGAAGGCGGGGGGCAGCCCTCCCCATCT
CTTGGCCCTGAGCCTGGAGGGGCCCCTTGAGGAACTCTGGATTTGGGAGTGCCCCTCAAG
GTGGCATCCCCAGCTGAGACACTGTGACTTTAAATTAAATCTTTGTAGCCTTTGAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATAGGCGTGCTGCACGATGTTGCCCGAAATATTGGTGCGGGGGGCCCGGGTGGCCGCAGG
CAGGTTCCCTGGGCTGGGGTCTCGTCTTGTTGCCCGCTTTTCCCCACAGCGGACGCCCGA
GAACCGCCTGGTCATGCAGCGGAGCCTGCACGCGACGGTGTCCCGGGCTCTCCCGCTCAT
TCCCATCGTGGTGGAGCAGACGGGTCGCGGGGAGCGCGCTTATGACATCTACTCACGGCT
GCTGCGGGAGCGCATCGTGTGCGTCATGGGCCCAATTGACGACAGTGTTGCCAGCCTGGT
CATCGCACAGCTGCTTTTCCTGCAGTCTGAAAGCAACAAGAAGCCCATCCACATGTATAT
CAACAGCCCTGGTGGCGTGGTGACCTCGGGTCTGGCCATCTACGACACGATGCAGTACAT
CCTGAACCCCATCTGCACGTGGTGTGTGGGACAGGCCGCCAGCATGGGCTCCCTGCTTCT
GGCCGCAGGCACCCCGGGCATGCGCCACTCGCTCCCCAACTCCCGCATCATGATCCACCA
GCCCTCTGGGGGCGCCAGGGGCCAAGCCACAGACATTGCCATCCAGGCAGAGGAGATCAT
GAAACTCAAGAAGCAGCTCTACAGCATCTACGCCAAGCACACCAAGCAGAGCCTGCAGGT
GATTGAGTCGGCCATGGAGAGGGACCGCTACATGAGCCCCATGGAGGCCCAGGAGTTTGG
CATCTTAGACAAAGTCCTGGTCCACCCTCCCCAGGATGGTGAGGACGAGCCTGAGCTGGT
GCAGAAGGAGCCCGCGGCCGCGGCAACCACAGCAGAACCTGCCCCAGCAAGCACCTGAGA
GCCAGCCCTCACCCTCACCCTCACCCTCCGGAGGAAGGCGGGGGGCAGCCCTCCCCATCT
CTTGGCCCTGAGCCTGGAGGGGCCCCTTGAGGAACTCTGGATTTGGGAGTGCCCCTCAAG
GTGGCATCCCCAGCTGAGACACTGTGACTTTAAATTAAATCTTTGTAGCCTTTGAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|963048|emb|CAA90705.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|963048|emb|CAA90705.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               891-1014, - strand, RNAz p=0.662521

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               891-1014, - strand, RNAz p=0.662521

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               6-203, gnl|bosTau2|chr7 (13993064-13992867)
               

               
               6-203, gnl|Hg17|chr19 (6312575-6312784)
               

               
               6-203, gnl|Mm7|chr17 (55201447-55201644)
               


               
               371-560, gnl|bosTau2|chr7 (13991212-13991022)
               

               
               371-560, gnl|Hg17|chr19 (6315462-6315651)
               

               
               371-560, gnl|Mm7|chr17 (55203955-55204144)
               


               
               665-1014, gnl|bosTau2|chr7 (13988210-13987869)
               

               
               665-1014, gnl|Hg17|chr19 (6319548-6319914)
               

               
               665-1014, gnl|Mm7|chr17 (55207007-55207313)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-203, gnl|bosTau2|chr7 (13993064-13992867)
               

               
               6-203, gnl|Hg17|chr19 (6312575-6312784)
               

               
               6-203, gnl|Mm7|chr17 (55201447-55201644)
               


               
               371-560, gnl|bosTau2|chr7 (13991212-13991022)
               

               
               371-560, gnl|Hg17|chr19 (6315462-6315651)
               

               
               371-560, gnl|Mm7|chr17 (55203955-55204144)
               


               
               665-1014, gnl|bosTau2|chr7 (13988210-13987869)
               

               
               665-1014, gnl|Hg17|chr19 (6319548-6319914)
               

               
               665-1014, gnl|Mm7|chr17 (55207007-55207313)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               nlu (0.191681)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cag (0.151194)
               

               
               lnt (0.142308)
               

               
               ssp (0.13552)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)

	6-203, gnl\|bosTau2\|chr7 (13993064-13992867)
	6-203, gnl\|Hg17\|chr19 (6312575-6312784)
	6-203, gnl\|Mm7\|chr17 (55201447-55201644)

	371-560, gnl\|bosTau2\|chr7 (13991212-13991022)
	371-560, gnl\|Hg17\|chr19 (6315462-6315651)
	371-560, gnl\|Mm7\|chr17 (55203955-55204144)

	665-1014, gnl\|bosTau2\|chr7 (13988210-13987869)
	665-1014, gnl\|Hg17\|chr19 (6319548-6319914)
	665-1014, gnl\|Mm7\|chr17 (55207007-55207313)

	ece (0.229305)
	nlu (0.191681)
	duo (0.172801)
	fhi (0.169578)
	nje (0.16592)
	cag (0.151194)
	lnt (0.142308)
	ssp (0.13552)
	ute (0.132784)
	cov (0.132153)
	ebs (0.118301)
	nbm (0.0993246)