Non-Coding RNA Search

Ss1.1-Pig4-TMW8060P14.5

Sequence:


               
               CAAACCTAAACTTTCCCTCTAAATTCTCTTCTGTATCTATGTTACAAACAGTGTGATAAT
ATCAGATAGTAAGGGAAACATTCTTTCAATATACAAAACTTTTTTTGGTGTGGAGTACAT
TTTTTCCAATCACAGGAACTTCAACTATTGTGGGAAATGTTTATTTTTGTGGCACTGTAT
ATGTTAAGAAATTTTATTTAAAAAAAAAAACTGTAAAGTTTAATGTCCATAAGAAATATT
TCTCCTTGAAGCTACCTTATCAAGAATGAAAACCAATATGGGAAGTCCATATTTAAGCCC
TGCTATAATAAAATATATATTTTAATTATATTTGACAGGTTTTGCATCTAAATTGACCTA
TTTATTCATTCTTGATTAAATGCACTGAGAAGTAAAGGGTCTGTCTTTATCATGTCCGTG
AAAATGAAATTAGAAATGTACTATTCAAGTGATTATGAAGGCACCTCCCCCCCTTCAAGG
TATAGCTGTAATTTAAAAACTACTGCAGATATTTTCATTTTCTTGTGGGCTTTATGTACA
TCTGTTGATTTGGTATTTCTTTGTGTATTCTCTAGACTAGTGTTCCTCCATCCCTCACTT
GAGCTCAAAGTAGGTTTTGTTGTACCATTGTGATTAGAATTTAAACTAATTCAGAGAATT
GTATCCTTTATTGTACATACTGTATTCTTTAATTTTTAATTCGTTGTCATACTGTCTGTG
CTGATGGCTTGGCTTAAGATTTCGACGCATAAACGAGGTCACTGTTGATCAGTGTTGCTA
GTGGCTTGGCAGCTCTTCGTAAAAGCATATTGGGTTGGAAAGGTGTTTGCCTTTTTTTTC
AAATTATTTAATAGGTGTATGGTACCATTTAAAAGTGGTTGTATCTGAATTTACTGTGGG
GATAACATACACTGTAATGGGGAAAAAATACCTACAATCAATTTCAAAATGGCTTTTCTT
TGTATTTCAGTTGAAAACCCCAGTGCATGTACGCCCTCTGAGATGCAATAAACACCTTGA
ACAAAGAAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAACCTAAACTTTCCCTCTAAATTCTCTTCTGTATCTATGTTACAAACAGTGTGATAAT
ATCAGATAGTAAGGGAAACATTCTTTCAATATACAAAACTTTTTTTGGTGTGGAGTACAT
TTTTTCCAATCACAGGAACTTCAACTATTGTGGGAAATGTTTATTTTTGTGGCACTGTAT
ATGTTAAGAAATTTTATTTAAAAAAAAAAACTGTAAAGTTTAATGTCCATAAGAAATATT
TCTCCTTGAAGCTACCTTATCAAGAATGAAAACCAATATGGGAAGTCCATATTTAAGCCC
TGCTATAATAAAATATATATTTTAATTATATTTGACAGGTTTTGCATCTAAATTGACCTA
TTTATTCATTCTTGATTAAATGCACTGAGAAGTAAAGGGTCTGTCTTTATCATGTCCGTG
AAAATGAAATTAGAAATGTACTATTCAAGTGATTATGAAGGCACCTCCCCCCCTTCAAGG
TATAGCTGTAATTTAAAAACTACTGCAGATATTTTCATTTTCTTGTGGGCTTTATGTACA
TCTGTTGATTTGGTATTTCTTTGTGTATTCTCTAGACTAGTGTTCCTCCATCCCTCACTT
GAGCTCAAAGTAGGTTTTGTTGTACCATTGTGATTAGAATTTAAACTAATTCAGAGAATT
GTATCCTTTATTGTACATACTGTATTCTTTAATTTTTAATTCGTTGTCATACTGTCTGTG
CTGATGGCTTGGCTTAAGATTTCGACGCATAAACGAGGTCACTGTTGATCAGTGTTGCTA
GTGGCTTGGCAGCTCTTCGTAAAAGCATATTGGGTTGGAAAGGTGTTTGCCTTTTTTTTC
AAATTATTTAATAGGTGTATGGTACCATTTAAAAGTGGTTGTATCTGAATTTACTGTGGG
GATAACATACACTGTAATGGGGAAAAAATACCTACAATCAATTTCAAAATGGCTTTTCTT
TGTATTTCAGTTGAAAACCCCAGTGCATGTACGCCCTCTGAGATGCAATAAACACCTTGA
ACAAAGAAAATG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               818-1017, + strand, RNAz p=0.929213

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               818-1017, + strand, RNAz p=0.929213

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_014841, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_014841, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1032, gnl|bosTau2|chr9 (10537313-10536288)
               

               
               1-1032, gnl|Hg17|chr6 (84320350-84319327)
               

               
               1-1032, gnl|Mm7|chr9 (86870001-86868978)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1032, gnl|bosTau2|chr9 (10537313-10536288)
               

               
               1-1032, gnl|Hg17|chr6 (84320350-84319327)
               

               
               1-1032, gnl|Mm7|chr9 (86870001-86868978)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cbe (0.956938)
               

               
               fco (0.628832)
               

               
               fcc (0.39557)
               

               
               hyp (0.285673)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               ret (0.128733)
               

               
               eru (0.120048)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.956938)
               

               
               fco (0.628832)
               

               
               fcc (0.39557)
               

               
               hyp (0.285673)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               ret (0.128733)
               

               
               eru (0.120048)

	1-1032, gnl\|bosTau2\|chr9 (10537313-10536288)
	1-1032, gnl\|Hg17\|chr6 (84320350-84319327)
	1-1032, gnl\|Mm7\|chr9 (86870001-86868978)

	cbe (0.956938)
	fco (0.628832)
	fcc (0.39557)
	hyp (0.285673)
	ece (0.229305)
	spc (0.226732)
	fbs (0.175346)
	fhi (0.169578)
	ret (0.128733)
	eru (0.120048)