Non-Coding RNA Search

Ss1.1-Pig4-TMW8060P16.5

Sequence:


               
               GCCGCTGGACTGGGTCACGCTGGAGACCAACATCGCCTACTGGCTGCACCCCCGGACCAG
TGCGCAGATCCACCTGCTGGGCAACGTGGTGATCTGGGCCTCGGCCAGCCTCGCCACCCT
GGCCTACGTCCTGCTCTTCCTTTGGTACCTGCTCAGACGCCGGCGGCACATCTGCGACCT
CCCCGAGGACTCCTGGCTGCGCTGGGTGCTGGCTGGGGCTCTGTGCGCCGGGGGCTGGGC
CGTGAACTACCTGCCCTTCTTCATGGTGGAGAAGACGCTCTTCCTCTACCACTACCTGCC
CGCCCTCGCCTTCCAGATCCTGCTGCTCCCTGTGGTCCTGGAGCACGTCAGCCACCACCT
CTGCAGGTCCCAGCTCCAGAGGAGCCTCTTCCACGCGCTGGTGGTGGCCTGGTTCGCCTC
TGCCTGTCACGTGTCCAACATGCTGCGCCCACTAACCTACGGGGACAGGTCGCTCTCCCC
CAGCGAGCTCAGGGCCCTTCGCTGGAAAGACAGCTGGGACATCTTGATCCGAAAACACTA
GTGCACACGAACCCGGCGAAGGACCGAGCGCCGAGGTCAGGACGCGGCAGAACCGCCTTG
GAGGAGCGGCTCTGGGCCTGGTGGAGACTCCGGCTTGGCAAGGGTTCCTCTCTTGAAGCA
GCCGTCTGAGAACCACCTCATCCTGAGCCGTAAAGAGCAGGCCCGCCGTCCACCCCCCCA
CCACCGCCCCGGCCTGCGGAGTGGGGGAGGCTGGTGTGGGACATGGTGACGGGGACAGAA
GGCCGGGAGCGAGTTCAGGCGAAACCAGACAAGGCCCCCGGCTTGTTCCTGTCCCCCTGT
CCCCCTGTCCCAGCACCCCAGTGAGGCCTGAGGAGTCAGCCTAAGGCTTCAGGGGCTACA
GGAATGACAGACTTGGATGAGGCTGTGGGGCCCTGGGTGCTCCCCTCACGTTGCTGACTT
GAAACCCCCCACCCCGAGGTCCTGCGCGAGGCGTGAGCTGCTCCCACAGAGGCGTTTCCG
TCATCCACGCACTTCCGTGTCCTGCTGACTTGGTGTCATTAAACAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCTGGACTGGGTCACGCTGGAGACCAACATCGCCTACTGGCTGCACCCCCGGACCAG
TGCGCAGATCCACCTGCTGGGCAACGTGGTGATCTGGGCCTCGGCCAGCCTCGCCACCCT
GGCCTACGTCCTGCTCTTCCTTTGGTACCTGCTCAGACGCCGGCGGCACATCTGCGACCT
CCCCGAGGACTCCTGGCTGCGCTGGGTGCTGGCTGGGGCTCTGTGCGCCGGGGGCTGGGC
CGTGAACTACCTGCCCTTCTTCATGGTGGAGAAGACGCTCTTCCTCTACCACTACCTGCC
CGCCCTCGCCTTCCAGATCCTGCTGCTCCCTGTGGTCCTGGAGCACGTCAGCCACCACCT
CTGCAGGTCCCAGCTCCAGAGGAGCCTCTTCCACGCGCTGGTGGTGGCCTGGTTCGCCTC
TGCCTGTCACGTGTCCAACATGCTGCGCCCACTAACCTACGGGGACAGGTCGCTCTCCCC
CAGCGAGCTCAGGGCCCTTCGCTGGAAAGACAGCTGGGACATCTTGATCCGAAAACACTA
GTGCACACGAACCCGGCGAAGGACCGAGCGCCGAGGTCAGGACGCGGCAGAACCGCCTTG
GAGGAGCGGCTCTGGGCCTGGTGGAGACTCCGGCTTGGCAAGGGTTCCTCTCTTGAAGCA
GCCGTCTGAGAACCACCTCATCCTGAGCCGTAAAGAGCAGGCCCGCCGTCCACCCCCCCA
CCACCGCCCCGGCCTGCGGAGTGGGGGAGGCTGGTGTGGGACATGGTGACGGGGACAGAA
GGCCGGGAGCGAGTTCAGGCGAAACCAGACAAGGCCCCCGGCTTGTTCCTGTCCCCCTGT
CCCCCTGTCCCAGCACCCCAGTGAGGCCTGAGGAGTCAGCCTAAGGCTTCAGGGGCTACA
GGAATGACAGACTTGGATGAGGCTGTGGGGCCCTGGGTGCTCCCCTCACGTTGCTGACTT
GAAACCCCCCACCCCGAGGTCCTGCGCGAGGCGTGAGCTGCTCCCACAGAGGCGTTTCCG
TCATCCACGCACTTCCGTGTCCTGCTGACTTGGTGTCATTAAACAGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7020589|dbj|BAA91190.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7020589|dbj|BAA91190.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               180-413, gnl|bosTau2|chr11 (82091131-82091362)
               

               
               180-413, gnl|Hg17|chr9 (131426979-131427211)
               

               
               180-413, gnl|Mm7|chr2 (32261018-32261223)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               180-413, gnl|bosTau2|chr11 (82091131-82091362)
               

               
               180-413, gnl|Hg17|chr9 (131426979-131427211)
               

               
               180-413, gnl|Mm7|chr2 (32261018-32261223)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nbm (0.198649)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nbm (0.198649)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               ecc (0.115035)

	180-413, gnl\|bosTau2\|chr11 (82091131-82091362)
	180-413, gnl\|Hg17\|chr9 (131426979-131427211)
	180-413, gnl\|Mm7\|chr2 (32261018-32261223)