Non-Coding RNA Search

Ss1.1-Pig4-TMW8060P21.3

Sequence:


               
               CGCCGAAACAGATCCATTTCTTGGTAATCAAAGCACATGTCTGATCTTTTCCCAACCCTT
GGCATTTGACTTTTACACATTCCTTCATATGCCTTCAACGAATGCCAGCTATTATCCCGT
GAGCCCTACTTGAATTTCTCCAAGGCAGCTACAGTTTGCCCTGTAAGATGAGTTTTGGAG
GTAAACGAAGTAACTGGACACACACTCACAAGTAACACCATCCAGCTGACCGTGGGGTAC
TGCTGCATGTACCTGTGTCAGATCTGCACTTGACCGATAGAGCAATTTATTCTTGATGTA
TGCAATTGCACACTGTAATTATATTAACAGAGCACACTAATAATTTGTATAAATTATATA
TATTAGATCTCGGGTATGGTTTTTACATTCTCCCATGGGGAACTTCCTTCCTTCCTGATG
TGGAATTGTACATTTAAACTTGGTCGGTGACCTTTGGGATACCATCAACCAGTGAGTGAA
GGACCAAGGGAAAGGCCCATGGCTGTTGCGACCATGTGCCCAGATTAATGTATATAGTCG
ATTGGAATGAGGTTTTATGAATACTTGTGTTTTTTTGAAGGCCTTTAATTTGTCTGCATA
TTAGCTTTTAATGTGGGATTAAGAAAATACTTTGACACCTATAAAGAAAAAATCGAAATA
CTACTTTTTAAAGACATTTCACAAATATTCACTTACATTACAGGCTGAAGGTATTTTATT
CATATGTATATTTATACCAATAAAATGATTTTACAAGTGGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCGAAACAGATCCATTTCTTGGTAATCAAAGCACATGTCTGATCTTTTCCCAACCCTT
GGCATTTGACTTTTACACATTCCTTCATATGCCTTCAACGAATGCCAGCTATTATCCCGT
GAGCCCTACTTGAATTTCTCCAAGGCAGCTACAGTTTGCCCTGTAAGATGAGTTTTGGAG
GTAAACGAAGTAACTGGACACACACTCACAAGTAACACCATCCAGCTGACCGTGGGGTAC
TGCTGCATGTACCTGTGTCAGATCTGCACTTGACCGATAGAGCAATTTATTCTTGATGTA
TGCAATTGCACACTGTAATTATATTAACAGAGCACACTAATAATTTGTATAAATTATATA
TATTAGATCTCGGGTATGGTTTTTACATTCTCCCATGGGGAACTTCCTTCCTTCCTGATG
TGGAATTGTACATTTAAACTTGGTCGGTGACCTTTGGGATACCATCAACCAGTGAGTGAA
GGACCAAGGGAAAGGCCCATGGCTGTTGCGACCATGTGCCCAGATTAATGTATATAGTCG
ATTGGAATGAGGTTTTATGAATACTTGTGTTTTTTTGAAGGCCTTTAATTTGTCTGCATA
TTAGCTTTTAATGTGGGATTAAGAAAATACTTTGACACCTATAAAGAAAAAATCGAAATA
CTACTTTTTAAAGACATTTCACAAATATTCACTTACATTACAGGCTGAAGGTATTTTATT
CATATGTATATTTATACCAATAAAATGATTTTACAAGTGGAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               3-762, gnl|bosTau2|chr23 (26227860-26228611)
               

               
               3-762, gnl|Hg17|chr6 (25727972-25728737)
               

               
               3-762, gnl|Mm7|chr13 (23379010-23378283)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-762, gnl|bosTau2|chr23 (26227860-26228611)
               

               
               3-762, gnl|Hg17|chr6 (25727972-25728737)
               

               
               3-762, gnl|Mm7|chr13 (23379010-23378283)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               lin (0.728014)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.728014)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               lyg (0.133103)
               

               
               ret (0.128733)
               

               
               tra (0.123092)

	3-762, gnl\|bosTau2\|chr23 (26227860-26228611)
	3-762, gnl\|Hg17\|chr6 (25727972-25728737)
	3-762, gnl\|Mm7\|chr13 (23379010-23378283)

	lin (0.728014)
	fcc (0.197785)
	col (0.195008)
	rec (0.17307)
	duo (0.172801)
	lyg (0.133103)
	ret (0.128733)
	tra (0.123092)