Non-Coding RNA Search

Ss1.1-Pig4-TMW8060P24.5

Sequence:


               
               GGAACACAGTCTGCGAGCATCTCCCAGCTTAGAAACTGGAGCTAAGACAGACCCAAGCCT
TGATGATGACATTGAAACTGAAGTTGACATCTCCACCTATGGCAAGGAGGTGAGAATGCA
AGAAAGCTTTGACACAGGAGCTTGATGGCTACACATTTCCCATGCTACCTTCCTGGTGGG
CCTGTGCCTTTTTTGAGCATGGGCATCTGATGACCTCTGACCTATGCATCCCTCCTAGGA
GCTCCTACAGGTGGTGGAAGCCATGAAAGCACTGCTTTTGAAAGAACGGCAGGAAAAGTT
GCAGCTGGAGATGCACCTTCGTGATGAGATTTGCAATGAGATGGTGGAGCAGATGCAACA
ACGGGAACAGTGGTGCAGTGAACATTTGGACACCCAAAAGGAACTACTGGAGGAGATGTA
TGAAGAGAAACTCACAATCCTCAAGGAGTCACTGACAAGTTTTTACCAAGAGGAGCTTCA
GGAGCGGGATGAGAAGATTGAGGAGTTAGAAGCTCTCTTGCAGGAAGCCAGAGAGCAGTC
AGTGGCCCATCAACAACCAGGGTCTGAACTGTCCCTCCGGCGGTCACAACGGTTGGCAGC
TTCAGCCTCCACCCAGCAGCTCCAGGAGATTAAAGCTAAATTGGAACAATGCAAAGCAGA
ACTAAACTCCACCACTGAAGGTGAGGAAGAAGAGGGGGCAGGAAGCATAACAGTGTTTTA
GGGAAAAGCTGTCCTTCAAACTTGGGCTTTCTGATGCCAACTCCAACATAATTTCCTCCC
CTGCAGTTATAACCCCCTGACCTTTCACTCAAGGATGCACGTCACTGCACTTGTTTTATT
TTGTGCAAATTAGTGTCAATTCAGTTAAAAGAGGTAAGACCAAGGCTAGAAAGCCTGCAC
ATGTAAGGTTATTGTTTCCTTTACTCAGAGCTGCGGAAGTATCAGAAAATGTTAGAACCA
CCGCCGTCAGCCAAGCCCTTCATCGTTGATGTAGACAAGAAGTTAGAAGAGGGCCAGAAG
GTAATTACCTTTCTCTGTTTACTAAAGCTCTCAACTAAGGCAATTTCCAACACCATATCC
CTGGTTCATGTGAAGACAAGATGTTTTTTGTGCACAGACCTGGAGAATGGCTACTTCATT
CAACTGATTAGCCTTTCTAATATTACTTCTCCCCAATGGTTCTCCAAATCCTCCAGATCA
CTATCCTGGTTGATCTTGGCCACAGTTTGGTTCCTACTCCTTTTTCAGAATATAAGGCTG
CTGCGGACAGAGCTTCAGAAACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACACAGTCTGCGAGCATCTCCCAGCTTAGAAACTGGAGCTAAGACAGACCCAAGCCT
TGATGATGACATTGAAACTGAAGTTGACATCTCCACCTATGGCAAGGAGGTGAGAATGCA
AGAAAGCTTTGACACAGGAGCTTGATGGCTACACATTTCCCATGCTACCTTCCTGGTGGG
CCTGTGCCTTTTTTGAGCATGGGCATCTGATGACCTCTGACCTATGCATCCCTCCTAGGA
GCTCCTACAGGTGGTGGAAGCCATGAAAGCACTGCTTTTGAAAGAACGGCAGGAAAAGTT
GCAGCTGGAGATGCACCTTCGTGATGAGATTTGCAATGAGATGGTGGAGCAGATGCAACA
ACGGGAACAGTGGTGCAGTGAACATTTGGACACCCAAAAGGAACTACTGGAGGAGATGTA
TGAAGAGAAACTCACAATCCTCAAGGAGTCACTGACAAGTTTTTACCAAGAGGAGCTTCA
GGAGCGGGATGAGAAGATTGAGGAGTTAGAAGCTCTCTTGCAGGAAGCCAGAGAGCAGTC
AGTGGCCCATCAACAACCAGGGTCTGAACTGTCCCTCCGGCGGTCACAACGGTTGGCAGC
TTCAGCCTCCACCCAGCAGCTCCAGGAGATTAAAGCTAAATTGGAACAATGCAAAGCAGA
ACTAAACTCCACCACTGAAGGTGAGGAAGAAGAGGGGGCAGGAAGCATAACAGTGTTTTA
GGGAAAAGCTGTCCTTCAAACTTGGGCTTTCTGATGCCAACTCCAACATAATTTCCTCCC
CTGCAGTTATAACCCCCTGACCTTTCACTCAAGGATGCACGTCACTGCACTTGTTTTATT
TTGTGCAAATTAGTGTCAATTCAGTTAAAAGAGGTAAGACCAAGGCTAGAAAGCCTGCAC
ATGTAAGGTTATTGTTTCCTTTACTCAGAGCTGCGGAAGTATCAGAAAATGTTAGAACCA
CCGCCGTCAGCCAAGCCCTTCATCGTTGATGTAGACAAGAAGTTAGAAGAGGGCCAGAAG
GTAATTACCTTTCTCTGTTTACTAAAGCTCTCAACTAAGGCAATTTCCAACACCATATCC
CTGGTTCATGTGAAGACAAGATGTTTTTTGTGCACAGACCTGGAGAATGGCTACTTCATT
CAACTGATTAGCCTTTCTAATATTACTTCTCCCCAATGGTTCTCCAAATCCTCCAGATCA
CTATCCTGGTTGATCTTGGCCACAGTTTGGTTCCTACTCCTTTTTCAGAATATAAGGCTG
CTGCGGACAGAGCTTCAGAAACTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               594-713, - strand, RNAz p=0.731907

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               594-713, - strand, RNAz p=0.731907

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-378, gnl|bosTau2|chr7 (34727974-34728351)
               

               
               1-378, gnl|Hg17|chr5 (137548156-137548534)
               

               
               1-378, gnl|Mm7|chr18 (35005523-35005891)
               


               
               476-1284, gnl|bosTau2|chr7 (34728850-34729645)
               

               
               476-1284, gnl|Hg17|chr5 (137549093-137549917)
               

               
               476-1284, gnl|Mm7|chr18 (35006605-35007426)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-378, gnl|bosTau2|chr7 (34727974-34728351)
               

               
               1-378, gnl|Hg17|chr5 (137548156-137548534)
               

               
               1-378, gnl|Mm7|chr18 (35005523-35005891)
               


               
               476-1284, gnl|bosTau2|chr7 (34728850-34729645)
               

               
               476-1284, gnl|Hg17|chr5 (137549093-137549917)
               

               
               476-1284, gnl|Mm7|chr18 (35006605-35007426)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nlu (0.191681)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)

	1-378, gnl\|bosTau2\|chr7 (34727974-34728351)
	1-378, gnl\|Hg17\|chr5 (137548156-137548534)
	1-378, gnl\|Mm7\|chr18 (35005523-35005891)

	476-1284, gnl\|bosTau2\|chr7 (34728850-34729645)
	476-1284, gnl\|Hg17\|chr5 (137549093-137549917)
	476-1284, gnl\|Mm7\|chr18 (35006605-35007426)