Non-Coding RNA Search

Ss1.1-Pig4-TMW8061A10.3

Sequence:


               
               TTTGTTCCCAAGAATTCCAGTTCCAGTTCAGAAGAATATCGATCAACAGATTAAAACCCG
GCCAAGAAAAATCAAGAAAGATGGGAAGGAAGGTGCTGAGGAAATAGACAGACATGTTGA
ACGCAGACGTTCGAGATCTCCAAGGAGATCACTGAGTCCACGGAGGTCCCCAAGAAGATC
CAGAAGTAGAAGCCATCATCGGGAGGGCCATGGGTCCTCTAGTTTTGACCGAGAACTAGA
AAGAGAGAAAGAACGCCAGCGACTAGAGCGTGAAGCCAAAGAAAGAGAGAAAGAAAGGCG
AAGATCCCGAAGTATTGATCGGGGGCTAGAACGCAGGCATAGCAGGAGTAGGGAAAGACA
TAGAAGCCGTAGTCGAAGTCGTGATAGGAAAGGAGACAGAAGGGACAGGGATCGGGAAAG
AGAGAAAGAAAATGAGAGGGGTAGAAGACGAGATCGAGACTATGACAAGGAAAGAGGTAA
TGACCGAGAAAAGGAGCGGTCGAGAGAACGGTCCAAGGAACGGCGAAGTAGAGGGGAGGT
GGAAGAGAAGAAGCATAAAGAAGACAAAGATGAGAGGCGGCACAGAGATGACAAAAAAGA
TCCCAAGAGAGAGAAGAAGCACAGTAGAAGTAGAAGCAGAGAAAGAAAACATAGGAGTAG
GAGTAGAAGTAGAAATGCTGGGAAACGGAGTAGGAGCAGGAGCAAAGAGAAAGCAAGTAA
ACATAAAAATGAAAGTAAAGAAAAATCAAATAAACGGAGTAGAAGTGGCAGTCAAGGAAG
AACTGACAGTGTTGAAAAATCAAGAAAACGGGAACATAGCCCCAGCAAAGAAAAATCTAG
GAAGCGCAGCAGAAGCAAAGAACGTTCCCACAAACGAGATCACAGCGATGGTAAGGACCA
GTCTGACAAACATGACCGCCGAAGGAGCCAAAGTATAGAACCAGAGAGCCAAGAAAAACA
ACATAAAAACAAAGAGGAGACTGTGTGAAAATTTTTTTTGTAAAAGTGGATCACATTGAA
TCCTATAAATGTTGGATTAAATCTGCTTTTTTTTCCTCCCGAGTTGAGATTGTGCAGTAG
TTAACGCACTCTTCAAGCTCCCTGTAGGCTGCATTTTCATTTCCTCTTTTGTGTAGGGAA
GTGCCTTTGTAATCCCATTTATTGCATTGATGTTTTCACCCAATTGTTGAGTTCGATACA
TGATGCACAGATTGTTCTTGCATTTTATTGTTTGTTTTTGAGATGTACAGTCTGTACATA
TGTCCTGAAAATGTTTTAATTCCTTTGGCATGGTTGCCATGTTGGTTAAATTTGTATAAG
GCAATAAACTGCCACTAATTCTATTTTTGTTTTGTAGGTGTGGGATTATGGTTTGTGTAC
TGAAGTTAGCATGGCTGTGCTTTTCGTAATAGAATGCTAAAGACTTTGAAAATGGATCTT
GGATGTCTATTATAGGAGAATTACATGCTTTCAATGTACATGAAGGCAACAGTTGTAGGA
TTAACATTCTTGTCCACTGTATTTATCTTGGACGGCTCTTGTTAATATGTTAAACTTAAT
ATTCTCCACAGGTAACTTTAGAGAGAATTTATGAGAAGTTAGTTTCTGATGCAGAGGTTT
AAATTAGGCTGTGATTTGATCAAAAGTCCTTTTAGCATTCTACCTCAAAGGGACACTGTT
AGTCTGCCTAAAGTTTATTCACTTAGTTTTCCTTTTTTATTTGAAAAAATACATGACATG
TAATCTTTTTCTTGAATTTTTCAGATTTTAAAGTACTATATTAAAGGAAAAATTCATGTC
TAAGCCTAGCATTCTTGCAGCAACCCTGTACTAACATGAAATTGGGAGAGGGTGGGGCAG
ATGAGTAGAGAAATAGTTGCAAGCCTCAAGCTTCCAAAGCGTTTTTATAAATGGAAAATA
CTTAAATTATGAAACAGCTTGATATAGTGTCCTTTTTTTAAATTCAAAACTTTTTTTATT
GATAATGAAGATTGCTGTTTGAGTTTTTAAACTTAATCTAGAACAGAGAAGTATTAAAAG
TAATGCTATGCTGCATTATTTAAGATTATCAGCAAATTATTTGATAGATTGTTCTTATGA
CTTGTATTCTGATTACAGAGAAGGATCATGAGTGTGGAATAAATACTGGATTAAATCCTT
GATCCTGGGTGTTGCCTTTTCCCCCCACTTGTTAACATTTTTTTACAGAGTATTTATAAT
TGTGGAAACAGATAACAATGTCCATAGTAGAGTTACACTTTGTGTGGAGGCATTATCTCA
GTGCTCAGATGACAAGTGAATTACAGACTTACAGACCGAATTGGAGGTATGTGATAGCCA
GTAATCCTCCCTAGAGTTCTTTATAATGGCAGTTACCTTTGTCGTTGGGCGTTGCTTGTG
TCATCAGGTGCTTCTTCACATTGGGTGATAACTCCATTTCATATCAGAGGTCCTTATTGT
GAGACTTTGCCCTTGGGTTATATATTAGAATCATTTAAAATTTGGACTTCAAGGAACTTT
TAAAAGATAATCAGTTCTTTCTAGAACAGAGAAACAGGTCACACGTGGTTTATAAAGTCA
TTGCCAGGACAAAAATTGAGTGTTACTGACTGTGTATATCATATTGACATTTGTTTTATC
TCACTTGTTCATATTGGCCAACTGATGGGCACCCCAAAACCACCTCGCAAGAAGGGTTAA
GGGAAACAAAGGAGTACGTTTGGTAAAGTACTTCATATGTGGGCTTACATTTGTACCTAA
CTCCAAAAAAACCTCATTAAATGAAGGAATTCCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTTCCCAAGAATTCCAGTTCCAGTTCAGAAGAATATCGATCAACAGATTAAAACCCG
GCCAAGAAAAATCAAGAAAGATGGGAAGGAAGGTGCTGAGGAAATAGACAGACATGTTGA
ACGCAGACGTTCGAGATCTCCAAGGAGATCACTGAGTCCACGGAGGTCCCCAAGAAGATC
CAGAAGTAGAAGCCATCATCGGGAGGGCCATGGGTCCTCTAGTTTTGACCGAGAACTAGA
AAGAGAGAAAGAACGCCAGCGACTAGAGCGTGAAGCCAAAGAAAGAGAGAAAGAAAGGCG
AAGATCCCGAAGTATTGATCGGGGGCTAGAACGCAGGCATAGCAGGAGTAGGGAAAGACA
TAGAAGCCGTAGTCGAAGTCGTGATAGGAAAGGAGACAGAAGGGACAGGGATCGGGAAAG
AGAGAAAGAAAATGAGAGGGGTAGAAGACGAGATCGAGACTATGACAAGGAAAGAGGTAA
TGACCGAGAAAAGGAGCGGTCGAGAGAACGGTCCAAGGAACGGCGAAGTAGAGGGGAGGT
GGAAGAGAAGAAGCATAAAGAAGACAAAGATGAGAGGCGGCACAGAGATGACAAAAAAGA
TCCCAAGAGAGAGAAGAAGCACAGTAGAAGTAGAAGCAGAGAAAGAAAACATAGGAGTAG
GAGTAGAAGTAGAAATGCTGGGAAACGGAGTAGGAGCAGGAGCAAAGAGAAAGCAAGTAA
ACATAAAAATGAAAGTAAAGAAAAATCAAATAAACGGAGTAGAAGTGGCAGTCAAGGAAG
AACTGACAGTGTTGAAAAATCAAGAAAACGGGAACATAGCCCCAGCAAAGAAAAATCTAG
GAAGCGCAGCAGAAGCAAAGAACGTTCCCACAAACGAGATCACAGCGATGGTAAGGACCA
GTCTGACAAACATGACCGCCGAAGGAGCCAAAGTATAGAACCAGAGAGCCAAGAAAAACA
ACATAAAAACAAAGAGGAGACTGTGTGAAAATTTTTTTTGTAAAAGTGGATCACATTGAA
TCCTATAAATGTTGGATTAAATCTGCTTTTTTTTCCTCCCGAGTTGAGATTGTGCAGTAG
TTAACGCACTCTTCAAGCTCCCTGTAGGCTGCATTTTCATTTCCTCTTTTGTGTAGGGAA
GTGCCTTTGTAATCCCATTTATTGCATTGATGTTTTCACCCAATTGTTGAGTTCGATACA
TGATGCACAGATTGTTCTTGCATTTTATTGTTTGTTTTTGAGATGTACAGTCTGTACATA
TGTCCTGAAAATGTTTTAATTCCTTTGGCATGGTTGCCATGTTGGTTAAATTTGTATAAG
GCAATAAACTGCCACTAATTCTATTTTTGTTTTGTAGGTGTGGGATTATGGTTTGTGTAC
TGAAGTTAGCATGGCTGTGCTTTTCGTAATAGAATGCTAAAGACTTTGAAAATGGATCTT
GGATGTCTATTATAGGAGAATTACATGCTTTCAATGTACATGAAGGCAACAGTTGTAGGA
TTAACATTCTTGTCCACTGTATTTATCTTGGACGGCTCTTGTTAATATGTTAAACTTAAT
ATTCTCCACAGGTAACTTTAGAGAGAATTTATGAGAAGTTAGTTTCTGATGCAGAGGTTT
AAATTAGGCTGTGATTTGATCAAAAGTCCTTTTAGCATTCTACCTCAAAGGGACACTGTT
AGTCTGCCTAAAGTTTATTCACTTAGTTTTCCTTTTTTATTTGAAAAAATACATGACATG
TAATCTTTTTCTTGAATTTTTCAGATTTTAAAGTACTATATTAAAGGAAAAATTCATGTC
TAAGCCTAGCATTCTTGCAGCAACCCTGTACTAACATGAAATTGGGAGAGGGTGGGGCAG
ATGAGTAGAGAAATAGTTGCAAGCCTCAAGCTTCCAAAGCGTTTTTATAAATGGAAAATA
CTTAAATTATGAAACAGCTTGATATAGTGTCCTTTTTTTAAATTCAAAACTTTTTTTATT
GATAATGAAGATTGCTGTTTGAGTTTTTAAACTTAATCTAGAACAGAGAAGTATTAAAAG
TAATGCTATGCTGCATTATTTAAGATTATCAGCAAATTATTTGATAGATTGTTCTTATGA
CTTGTATTCTGATTACAGAGAAGGATCATGAGTGTGGAATAAATACTGGATTAAATCCTT
GATCCTGGGTGTTGCCTTTTCCCCCCACTTGTTAACATTTTTTTACAGAGTATTTATAAT
TGTGGAAACAGATAACAATGTCCATAGTAGAGTTACACTTTGTGTGGAGGCATTATCTCA
GTGCTCAGATGACAAGTGAATTACAGACTTACAGACCGAATTGGAGGTATGTGATAGCCA
GTAATCCTCCCTAGAGTTCTTTATAATGGCAGTTACCTTTGTCGTTGGGCGTTGCTTGTG
TCATCAGGTGCTTCTTCACATTGGGTGATAACTCCATTTCATATCAGAGGTCCTTATTGT
GAGACTTTGCCCTTGGGTTATATATTAGAATCATTTAAAATTTGGACTTCAAGGAACTTT
TAAAAGATAATCAGTTCTTTCTAGAACAGAGAAACAGGTCACACGTGGTTTATAAAGTCA
TTGCCAGGACAAAAATTGAGTGTTACTGACTGTGTATATCATATTGACATTTGTTTTATC
TCACTTGTTCATATTGGCCAACTGATGGGCACCCCAAAACCACCTCGCAAGAAGGGTTAA
GGGAAACAAAGGAGTACGTTTGGTAAAGTACTTCATATGTGGGCTTACATTTGTACCTAA
CTCCAAAAAAACCTCATTAAATGAAGGAATTCCTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CTD9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CTD9_MOUSE

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               134-252, + strand, RNAz p=0.622891
               

               
               1164-1317, - strand, RNAz p=0.970254
               

               
               2004-2123, - strand, RNAz p=0.581068

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               134-252, + strand, RNAz p=0.622891
               

               
               1164-1317, - strand, RNAz p=0.970254
               

               
               2004-2123, - strand, RNAz p=0.581068

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               1207-1277, + strand, RNAmicro p=0.942475

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1207-1277, + strand, RNAmicro p=0.942475

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AL833950, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AL833950, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               134-2202, gnl|bosTau2|chr3 (30430492-30428423)
               

               
               134-2202, gnl|Hg17|chr1 (108953824-108955903)
               

               
               134-2202, gnl|Mm7|chr3 (108723052-108721041)
               


               
               2219-2792, gnl|bosTau2|chr3 (30428425-30427871)
               

               
               2219-2792, gnl|Hg17|chr1 (108955901-108956462)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               134-2202, gnl|bosTau2|chr3 (30430492-30428423)
               

               
               134-2202, gnl|Hg17|chr1 (108953824-108955903)
               

               
               134-2202, gnl|Mm7|chr3 (108723052-108721041)
               


               
               2219-2792, gnl|bosTau2|chr3 (30428425-30427871)
               

               
               2219-2792, gnl|Hg17|chr1 (108955901-108956462)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               ski (0.586941)
               

               
               liv (0.585137)
               

               
               tra (0.492368)
               

               
               spc (0.453463)
               

               
               lin (0.436808)
               

               
               thg (0.380373)
               

               
               fbs (0.350693)
               

               
               rec (0.346141)
               

               
               eye (0.341006)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               med (0.232504)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               eje (0.0988338)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ski (0.586941)
               

               
               liv (0.585137)
               

               
               tra (0.492368)
               

               
               spc (0.453463)
               

               
               lin (0.436808)
               

               
               thg (0.380373)
               

               
               fbs (0.350693)
               

               
               rec (0.346141)
               

               
               eye (0.341006)
               

               
               spl (0.286369)
               

               
               lyg (0.266205)
               

               
               ret (0.257467)
               

               
               bla (0.248694)
               

               
               med (0.232504)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               hlv (0.139256)
               

               
               kid (0.129735)
               

               
               eje (0.0988338)

	134-252, + strand, RNAz p=0.622891
	1164-1317, - strand, RNAz p=0.970254
	2004-2123, - strand, RNAz p=0.581068

	134-2202, gnl\|bosTau2\|chr3 (30430492-30428423)
	134-2202, gnl\|Hg17\|chr1 (108953824-108955903)
	134-2202, gnl\|Mm7\|chr3 (108723052-108721041)

	2219-2792, gnl\|bosTau2\|chr3 (30428425-30427871)
	2219-2792, gnl\|Hg17\|chr1 (108955901-108956462)

	ski (0.586941)
	liv (0.585137)
	tra (0.492368)
	spc (0.453463)
	lin (0.436808)
	thg (0.380373)
	fbs (0.350693)
	rec (0.346141)
	eye (0.341006)
	spl (0.286369)
	lyg (0.266205)
	ret (0.257467)
	bla (0.248694)
	med (0.232504)
	hea (0.204499)
	fcc (0.197785)
	aor (0.195274)
	sin (0.174948)
	isp (0.150376)
	hyp (0.142837)
	hlv (0.139256)
	kid (0.129735)
	eje (0.0988338)