Ss1.1-Pig4-TMW8061A14.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCTGCGGCAGCGTCGAGGGTCCGCGCCTGGGGCTGTGAGTGGATTGTCTGCGGCAGCGT CGAGGGTCCGCGCCTGGGGCTACGGCGTCCGAGACAATGACTCTGAATGGCGGCGGCAGC GGAGCCGGCGGGAGCCGCGGCGGGGTCCGGGAGCGCGAGCGCCGTCGGGGCAGCACACCT TGGGGCCCGGCGCCCCCGCTGCACCGCCGAAGCATGCCGGTGGACGAGCGCGACCTGCAG GCGGCGCTGGCTCCGGGCGCTCTGGCAACGGCCGAGGCCGGGACCGCGGCCCAGGGTCCG AGGCTGGACTGGCCCGAGGGCTCCTCTGACTCGCTCAGCTCCGGAGGCAGCGATTCAGAC GAGAGCGTTTACAAAGTGCTGCTGCTGGGGGCACCTGGTGTCGGCAAGAGCGCTCTGGCG CGCATCTTCGGTGGAGTAGAGGATGGGCCTGAGGCGGAGGCTGCAGGGCACACGTATGAT CGCTCCATCATGGTGGACGGAGAAGAGGCATCGCTCATGGTCTATGACATCTGGGAGCAG GATGGGGGCCACTGGCTACCTGGCCACTGCATGGCCATGGGAGATGCATATGTCATCGTG TACTCAGTGACAGACAAGGACAGCTTTGAGAAGGCCTCAGAGCTGCGGGTCCAGTTGCGG CGGGCTCGACAGACAGACGACGTGCCCATCATCCTAGTGGGCAACAAGAGTGACCTGGTG CGCTCTCGTGAGGTCTCCTTGGATGAGGGCCGGGCCTGCGCCGTGGTCTTCGACTGCAAG TTTATCGAGACCTCGGCTGCGTTGCACCACAATGTCCAGGCACTGTTCGAGGGTGTCGTG CGTCAGATACGCCTGCGCAGGGACAGCAAAGAGGCCAACGCACGTCGGCAAGCGGGTACC CGGCGGCGAGAGAGCCTCGGCAAGAAGGCGAAGCGCTTCCTGGGTCGCATCGTCGCAAGA AATAGCCGCAAGATGGCCTTGCGTGCCAAGTCTAAATCCTGCCACGACCTCTCTGTGCTC TAGGCCCGGAGGCACTCGCTGTGTTCTGCAGACGGATGGGCAGATTGGTGGGCTGGCCCA GCCAACCGCCCAAGTGCCTCAGGGCTGGCTCGGACTCTGGGCCTGGACACCTCATGGTCA TGGACAGACTCTGCTGCCGAGGGAGGTGGCTCCCAGTGGCCGTCGAGGGTTGGGCCCTCA GAGATGCCTACGCAGGCCCAAATGCGTCCCCAGCAGCAGCTGGAGCCCAGCCCCCAGGGC AGGCCTGTGAGTCCGGAGAGGACGCTATACCTGTGGTGCGTGTGTCCTGCGGGGAGGCTG TTCAGTGCGGTGGCTATTTGTTTACATGCAGATTTTTGTAATAAAGACTATTTCCTGATA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCTGCGGCAGCGTCGAGGGTCCGCGCCTGGGGCTGTGAGTGGATTGTCTGCGGCAGCGT CGAGGGTCCGCGCCTGGGGCTACGGCGTCCGAGACAATGACTCTGAATGGCGGCGGCAGC GGAGCCGGCGGGAGCCGCGGCGGGGTCCGGGAGCGCGAGCGCCGTCGGGGCAGCACACCT TGGGGCCCGGCGCCCCCGCTGCACCGCCGAAGCATGCCGGTGGACGAGCGCGACCTGCAG GCGGCGCTGGCTCCGGGCGCTCTGGCAACGGCCGAGGCCGGGACCGCGGCCCAGGGTCCG AGGCTGGACTGGCCCGAGGGCTCCTCTGACTCGCTCAGCTCCGGAGGCAGCGATTCAGAC GAGAGCGTTTACAAAGTGCTGCTGCTGGGGGCACCTGGTGTCGGCAAGAGCGCTCTGGCG CGCATCTTCGGTGGAGTAGAGGATGGGCCTGAGGCGGAGGCTGCAGGGCACACGTATGAT CGCTCCATCATGGTGGACGGAGAAGAGGCATCGCTCATGGTCTATGACATCTGGGAGCAG GATGGGGGCCACTGGCTACCTGGCCACTGCATGGCCATGGGAGATGCATATGTCATCGTG TACTCAGTGACAGACAAGGACAGCTTTGAGAAGGCCTCAGAGCTGCGGGTCCAGTTGCGG CGGGCTCGACAGACAGACGACGTGCCCATCATCCTAGTGGGCAACAAGAGTGACCTGGTG CGCTCTCGTGAGGTCTCCTTGGATGAGGGCCGGGCCTGCGCCGTGGTCTTCGACTGCAAG TTTATCGAGACCTCGGCTGCGTTGCACCACAATGTCCAGGCACTGTTCGAGGGTGTCGTG CGTCAGATACGCCTGCGCAGGGACAGCAAAGAGGCCAACGCACGTCGGCAAGCGGGTACC CGGCGGCGAGAGAGCCTCGGCAAGAAGGCGAAGCGCTTCCTGGGTCGCATCGTCGCAAGA AATAGCCGCAAGATGGCCTTGCGTGCCAAGTCTAAATCCTGCCACGACCTCTCTGTGCTC TAGGCCCGGAGGCACTCGCTGTGTTCTGCAGACGGATGGGCAGATTGGTGGGCTGGCCCA GCCAACCGCCCAAGTGCCTCAGGGCTGGCTCGGACTCTGGGCCTGGACACCTCATGGTCA TGGACAGACTCTGCTGCCGAGGGAGGTGGCTCCCAGTGGCCGTCGAGGGTTGGGCCCTCA GAGATGCCTACGCAGGCCCAAATGCGTCCCCAGCAGCAGCTGGAGCCCAGCCCCCAGGGC AGGCCTGTGAGTCCGGAGAGGACGCTATACCTGTGGTGCGTGTGTCCTGCGGGGAGGCTG TTCAGTGCGGTGGCTATTTGTTTACATGCAGATTTTTGTAATAAAGACTATTTCCTGATA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 82-467, gnl|bosTau2|chr18 (28176696-28176311) | |
| 82-467, gnl|Hg17|chr16 (65516598-65516213) | |
| 82-467, gnl|Mm7|chr8 (103230231-103229849) | |
| 578-743, gnl|bosTau2|chr13 (43214144-43214309) | |
| 578-743, gnl|canFam2|chr24 (23967704-23967900) | |
| 578-743, gnl|danRer3|chr11 (24291092-24291283) | |
| 578-743, gnl|dasNov1|scaffold_17249 (46402-46595) | |
| 578-743, gnl|echTel1|scaffold_272103 (5492-5688) | |
| 578-743, gnl|fr1|chrUn (62227778-62227587) | |
| 578-743, gnl|galGal2|chr20 (9565825-9566017) | |
| 578-743, gnl|hg17|chr20 (29533767-29533963) | |
| 578-743, gnl|Hg17|chr20 (29533785-29533950) | |
| 578-743, gnl|loxAfr1|scaffold_1634 (122765-122961) | |
| 578-743, gnl|mm7|chr2 (152374329-152374525) | |
| 578-743, gnl|Mm7|chr2 (152374347-152374512) | |
| 578-743, gnl|monDom2|scaffold_38 (1595195-1595004) | |
| 578-743, gnl|oryCun1|scaffold_211458 (124688-124504) | |
| 578-743, gnl|panTro1|chr21 (31223298-31223494) | |
| 578-743, gnl|rheMac2|chr10 (33088426-33088230) | |
| 578-743, gnl|rn3|chr3 (142889229-142889420) | |
| 578-743, gnl|tetNig1|chr8 (7381087-7380896) | |
| 578-743, gnl|xenTro1|scaffold_1725 (64574-64774) | |
| 745-1026, gnl|bosTau2|chr13 (43215738-43216014) | |
| 745-1026, gnl|Hg17|chr20 (29535622-29535898) | |
| 745-1026, gnl|Mm7|chr2 (152375302-152375578) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 82-467, gnl|bosTau2|chr18 (28176696-28176311) | |
| 82-467, gnl|Hg17|chr16 (65516598-65516213) | |
| 82-467, gnl|Mm7|chr8 (103230231-103229849) | |
| 578-743, gnl|bosTau2|chr13 (43214144-43214309) | |
| 578-743, gnl|canFam2|chr24 (23967704-23967900) | |
| 578-743, gnl|danRer3|chr11 (24291092-24291283) | |
| 578-743, gnl|dasNov1|scaffold_17249 (46402-46595) | |
| 578-743, gnl|echTel1|scaffold_272103 (5492-5688) | |
| 578-743, gnl|fr1|chrUn (62227778-62227587) | |
| 578-743, gnl|galGal2|chr20 (9565825-9566017) | |
| 578-743, gnl|hg17|chr20 (29533767-29533963) | |
| 578-743, gnl|Hg17|chr20 (29533785-29533950) | |
| 578-743, gnl|loxAfr1|scaffold_1634 (122765-122961) | |
| 578-743, gnl|mm7|chr2 (152374329-152374525) | |
| 578-743, gnl|Mm7|chr2 (152374347-152374512) | |
| 578-743, gnl|monDom2|scaffold_38 (1595195-1595004) | |
| 578-743, gnl|oryCun1|scaffold_211458 (124688-124504) | |
| 578-743, gnl|panTro1|chr21 (31223298-31223494) | |
| 578-743, gnl|rheMac2|chr10 (33088426-33088230) | |
| 578-743, gnl|rn3|chr3 (142889229-142889420) | |
| 578-743, gnl|tetNig1|chr8 (7381087-7380896) | |
| 578-743, gnl|xenTro1|scaffold_1725 (64574-64774) | |
| 745-1026, gnl|bosTau2|chr13 (43215738-43216014) | |
| 745-1026, gnl|Hg17|chr20 (29535622-29535898) | |
| 745-1026, gnl|Mm7|chr2 (152375302-152375578) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nms (0.213858) | |
| hlv (0.139256) | |
| che (0.136314) | |
| pla (0.133672) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.213858) | |
| hlv (0.139256) | |
| che (0.136314) | |
| pla (0.133672) |