Non-Coding RNA Search

Ss1.1-Pig4-TMW8061A23.5

Sequence:


               
               CGGAAAATTCAGGAGCTGGCATCAAACTAGCAGCCTCATACTCAATGTTAATTACACGTA
TTATTAATTCTGGGATGAAAAGTACATGCTCTTGTGTCCAAAGCTTCCCAAGGACTTTGG
TGGGAATGCTCTAGTGTCCTGAGTGCAGAATTGAGGTGAAAGTCCAAACCTCTGAGTATT
ATCTTGGTGAACTGTGTGCTGTGTGCTCTGAGCTGTGTTTTCTTCTGTGCTCATGTGGCA
CAAGTACCATATTTTATCACAGTTCTTATGTACAGTGAAGATAAGTGACAAGCATATAAT
TTTCCTGCTTCACTGCTGTTCTACATTATGCAGGTTTGTTGTTGTTGTTTTTAAAAGAAA
TTAAGTGGTAGTTAGTCTCTAAAAATACAATGTTTCAGTCTACCACAAGGAATAAATAGA
AATGTAATCAGGGATTTAAAAAAAAAATAACTTATGCAGCTTTTCAAAGTTGATTGTTTC
AAAATTGGTGTTTATTTAAAATAAGTGGTAATGTACTTGAATGCATTTTTTTATGACAGT
GATTCAGCAATGGTAATTTTACTATTAAAGAAAGTGAAAGGTTTAGTTTTGTTAGCATGG
CTCAGCATGAAGCTGTCAGGTGTTTCTCACCTAAGGGCAAAAGAAAATGATAGTAATAAT
TGCAATAGTTGTATTTTATTTTTGCACGTATGCTAAGCATAGGCTTGAAAAGGTGGCTAG
GCAGGTAAATGTACTTCCTAAATTTGGAGATAATTATCTTTCCGTAGCTTCATTATACGT
GACTGTTTCCATGTTCTTCTTCCAGTGATGATTTTACAGTTACAGTTATCAGTTTACTCA
TAGGGAATTAAAATGTAATGTTTTTCAACTGTGATTTCCCCTAATTGAATAATACTGCTA
TGTGATATACTAACTACAAACTGCATTATTAATTCACTTAAACAAGTTCTGTTATGCTGT
GATTTAAACTCTCCTCACCACACTTATTAAAAAGGACCAACAGTTGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAAAATTCAGGAGCTGGCATCAAACTAGCAGCCTCATACTCAATGTTAATTACACGTA
TTATTAATTCTGGGATGAAAAGTACATGCTCTTGTGTCCAAAGCTTCCCAAGGACTTTGG
TGGGAATGCTCTAGTGTCCTGAGTGCAGAATTGAGGTGAAAGTCCAAACCTCTGAGTATT
ATCTTGGTGAACTGTGTGCTGTGTGCTCTGAGCTGTGTTTTCTTCTGTGCTCATGTGGCA
CAAGTACCATATTTTATCACAGTTCTTATGTACAGTGAAGATAAGTGACAAGCATATAAT
TTTCCTGCTTCACTGCTGTTCTACATTATGCAGGTTTGTTGTTGTTGTTTTTAAAAGAAA
TTAAGTGGTAGTTAGTCTCTAAAAATACAATGTTTCAGTCTACCACAAGGAATAAATAGA
AATGTAATCAGGGATTTAAAAAAAAAATAACTTATGCAGCTTTTCAAAGTTGATTGTTTC
AAAATTGGTGTTTATTTAAAATAAGTGGTAATGTACTTGAATGCATTTTTTTATGACAGT
GATTCAGCAATGGTAATTTTACTATTAAAGAAAGTGAAAGGTTTAGTTTTGTTAGCATGG
CTCAGCATGAAGCTGTCAGGTGTTTCTCACCTAAGGGCAAAAGAAAATGATAGTAATAAT
TGCAATAGTTGTATTTTATTTTTGCACGTATGCTAAGCATAGGCTTGAAAAGGTGGCTAG
GCAGGTAAATGTACTTCCTAAATTTGGAGATAATTATCTTTCCGTAGCTTCATTATACGT
GACTGTTTCCATGTTCTTCTTCCAGTGATGATTTTACAGTTACAGTTATCAGTTTACTCA
TAGGGAATTAAAATGTAATGTTTTTCAACTGTGATTTCCCCTAATTGAATAATACTGCTA
TGTGATATACTAACTACAAACTGCATTATTAATTCACTTAAACAAGTTCTGTTATGCTGT
GATTTAAACTCTCCTCACCACACTTATTAAAAAGGACCAACAGTTGCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               522-714, - strand, RNAz p=0.927942

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               522-714, - strand, RNAz p=0.927942

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-1008, gnl|bosTau2|chr26 (24129425-24128439)
               

               
               4-1008, gnl|Hg17|chr10 (118635321-118634302)
               

               
               4-1008, gnl|Mm7|chr19 (58896594-58895576)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-1008, gnl|bosTau2|chr26 (24129425-24128439)
               

               
               4-1008, gnl|Hg17|chr10 (118635321-118634302)
               

               
               4-1008, gnl|Mm7|chr19 (58896594-58895576)

Expressed library(ies): 18 entry(ies)

More info

Expressed library(ies): 18 entry(ies)

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               fco (0.78604)
               

               
               ret (0.643666)
               

               
               pro (0.512033)
               

               
               mga (0.32041)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 18 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.78604)
               

               
               ret (0.643666)
               

               
               pro (0.512033)
               

               
               mga (0.32041)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               mgp (0.230681)
               

               
               ecc (0.23007)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               ski (0.146735)
               

               
               hyp (0.142837)
               

               
               kid (0.129735)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	4-1008, gnl\|bosTau2\|chr26 (24129425-24128439)
	4-1008, gnl\|Hg17\|chr10 (118635321-118634302)
	4-1008, gnl\|Mm7\|chr19 (58896594-58895576)

	fco (0.78604)
	ret (0.643666)
	pro (0.512033)
	mga (0.32041)
	liv (0.292569)
	lin (0.291206)
	mgp (0.230681)
	ecc (0.23007)
	sag (0.182715)
	gul (0.177588)
	fbs (0.175346)
	ski (0.146735)
	hyp (0.142837)
	kid (0.129735)
	eru (0.120048)
	jca (0.11396)
	jej (0.0989218)
	eje (0.0988338)