Non-Coding RNA Search

Ss1.1-Pig4-TMW8061A24.3

Sequence:


               
               CACGTCCCCGATTCAGACGGATTCAGACGGAGGCGTGAGGTCTTCCAGGATGTCACATTC
CTTCCTGCCGATTTTCTAGCTCCTATTTAGACTCCGAGGCTCTCCAGGCAGGCGGGGCTC
CCACCCCCAGCGTCTGACCAATGACGTCGTTTTGCCTCAAATGGCCAATTGTGCGAAGGG
ACAAAGCCGCAGCCACCCTGTTCAATGGTTACCAAGCTGTTTTTTGGAAACTCGTACCCA
GGGCCGGCTGTGACTGTCCCTCTGTGGGCAGTTGGGACGGCGTGGCCTGAGGGGCTGTGG
AACGGGGCCCAGAAACCTCCAGACACGTTCTAGTTCAGTGTTTCTTTTGTCCTTCCATCG
GGGGCCCGGCCTGGCTGCTCCCCAGTGTGAGACGCCGCAAGGTACGAGGAAAACCAGCTG
CAAAGCAAAGATGTCCACGCTGTGTTTCTCCGATGAAAATGCGAGTCTTGTTCACGGCCC
GGAGGAAACGTCTCTGGTTCTGGGCTGAGGCCGCACGCGTCGCACACAAGCGAAAGGAGA
CCCCAAAGCCCTCGTGCCTCGATGAGTTAGAAACGTGCCTTCGCGGGTGAGTGGCCTTTT
CCAGACACACAAGCATGGCACCCTCAGGGGTCAGCCGTGGGAGATGTTTTCCGAGCAAAC
GTTTCGAGGTGGTCGTGTCGTCGTGTCTGTGAGCGCTCTGCCTTCGGGTCACCTGCACCT
GGCTCTTGCCCCTTGAGGTGTGTACTTAAAGTTTTTAATTTGGTCAGAACTGTTACCAAA
AAAACAAGGGTCAGTTTTATGAAGACAGGAAAAATGTAAACCTATTTTTGTGACTTAAAA
ATTTTATGAGAGCTCCGAGACACTGGAGGCTGTTGTTTTTTTTTTTAACAAATGTGTATT
TATTAATGTTCAGAACACTGGAATTTTGACACAAATGAGGAAAGAGTCTACAATAAATTA
AAGATTTTTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACGTCCCCGATTCAGACGGATTCAGACGGAGGCGTGAGGTCTTCCAGGATGTCACATTC
CTTCCTGCCGATTTTCTAGCTCCTATTTAGACTCCGAGGCTCTCCAGGCAGGCGGGGCTC
CCACCCCCAGCGTCTGACCAATGACGTCGTTTTGCCTCAAATGGCCAATTGTGCGAAGGG
ACAAAGCCGCAGCCACCCTGTTCAATGGTTACCAAGCTGTTTTTTGGAAACTCGTACCCA
GGGCCGGCTGTGACTGTCCCTCTGTGGGCAGTTGGGACGGCGTGGCCTGAGGGGCTGTGG
AACGGGGCCCAGAAACCTCCAGACACGTTCTAGTTCAGTGTTTCTTTTGTCCTTCCATCG
GGGGCCCGGCCTGGCTGCTCCCCAGTGTGAGACGCCGCAAGGTACGAGGAAAACCAGCTG
CAAAGCAAAGATGTCCACGCTGTGTTTCTCCGATGAAAATGCGAGTCTTGTTCACGGCCC
GGAGGAAACGTCTCTGGTTCTGGGCTGAGGCCGCACGCGTCGCACACAAGCGAAAGGAGA
CCCCAAAGCCCTCGTGCCTCGATGAGTTAGAAACGTGCCTTCGCGGGTGAGTGGCCTTTT
CCAGACACACAAGCATGGCACCCTCAGGGGTCAGCCGTGGGAGATGTTTTCCGAGCAAAC
GTTTCGAGGTGGTCGTGTCGTCGTGTCTGTGAGCGCTCTGCCTTCGGGTCACCTGCACCT
GGCTCTTGCCCCTTGAGGTGTGTACTTAAAGTTTTTAATTTGGTCAGAACTGTTACCAAA
AAAACAAGGGTCAGTTTTATGAAGACAGGAAAAATGTAAACCTATTTTTGTGACTTAAAA
ATTTTATGAGAGCTCCGAGACACTGGAGGCTGTTGTTTTTTTTTTTAACAAATGTGTATT
TATTAATGTTCAGAACACTGGAATTTTGACACAAATGAGGAAAGAGTCTACAATAAATTA
AAGATTTTTGAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               20-972, gnl|bosTau2|chr5 (73867235-73868205)
               

               
               20-972, gnl|Hg17|chr22 (45078554-45077596)
               

               
               20-972, gnl|Mm7|chr15 (85982105-85981300)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-972, gnl|bosTau2|chr5 (73867235-73868205)
               

               
               20-972, gnl|Hg17|chr22 (45078554-45077596)
               

               
               20-972, gnl|Mm7|chr15 (85982105-85981300)

Expressed library(ies): 9 entry(ies)

More info

Expressed library(ies): 9 entry(ies)

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               cki (0.660939)
               

               
               cmu (0.55918)
               

               
               cut (0.509771)
               

               
               cst (0.280073)
               

               
               sag (0.182715)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.660939)
               

               
               cmu (0.55918)
               

               
               cut (0.509771)
               

               
               cst (0.280073)
               

               
               sag (0.182715)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               ecc (0.115035)

	20-972, gnl\|bosTau2\|chr5 (73867235-73868205)
	20-972, gnl\|Hg17\|chr22 (45078554-45077596)
	20-972, gnl\|Mm7\|chr15 (85982105-85981300)

	cki (0.660939)
	cmu (0.55918)
	cut (0.509771)
	cst (0.280073)
	sag (0.182715)
	liv (0.146284)
	csk (0.140746)
	kid (0.129735)
	ecc (0.115035)