Non-Coding RNA Search

Ss1.1-Pig4-TMW8061B07.3

Sequence:


               
               GATGACTTCAACATCAAAGTGATTTTCTCTACTCTCTTAGGAATGAAAGGAACACAGAAA
GACCCTGAAGCATTTCTTGTCCAGATTCTATCAAAATCACAATTGCCATCTGAGCACAGA
GAAGGTAAAGTGTTGTGGACTGGTTGGTTCTGCTGTATATTTGGAGACAGTCTTCTTGAG
ACTGTTTCAGAAGATTTCACCTGTCTACCCTTATTCCTTGCAAATGGAGCAGAGACTAAT
ACAGCAATAGTTGGAACCTGGTTTCAGAAAACTTTTGACTGTTATTTCCGTCCCTTAGCA
ATCAACGCATTTAACCTTTCCTGGATGGCTGCTATGTGGACTGCATGCAAAATGGACCGT
TATATGGCTACTACTGAATTTCTTTGGTCTGTACCCTGTAGCCCTCAAAGTCTGGACATT
TCTTATGCCATACATCCAGAAGATGCAAAAGCTTTGTGGGACAGTGTCCACAAAACACCT
GGGGAAGTTACCCAGGAGGAAGTTGACTTATTCATGGACTGCCTTTATTCACACTTCCAT
AGGCATTTCAAAATTCACTTATCAGCCACAAGATTGGTTCGTGTTTCAACGTCTGTAGCT
TCAGCACATACTGATGGAAAAATAAAGATTTTGTGTCATAAATACCTTATTGGAGTATTG
GCATATTTGACAGAACTGGCAATTTTTCAAATTGAGTGAGGACTTGTGGGGACCATAAGT
TATGGATTGTATACCTTTTCCTCACTGATTTTCTGCCTGGTTGCTTTGCTGAAAGGAACT
GTGAGAGAAATGGGCATCTGTCTCTGCATCTGTTTTCCTCACAGAGCCTTGGAGTTACCC
AGATGAAAACCAAGAAGAAGCTAGAAGAACTGAGAATGTGGAAGTGAATGAACCACGGCC
AGGCACTCATGTAACAGTCTTAGTCATCTGGGTTACCAGTCTCTAGAACATGCTGAGTTG
TTAATTTGTTGACCCTCTTTCTAAAAAGTATATAATGTGGAGTTCCCTTGTGGCTCAACA
TTTAAGAAACCAGCATTGTTACTTCTCTGGCTCTGATTAGAGCTGTGGCATGGATTCGAT
CCCTGTCCTGGGAACCTCTACATGCCATGGGTACAGCTGGAAAAAAAATGTAATGTTTAT
TATTTCAAACTTTTAGCATTCAAATGAGATATGTCCGATACTGAATATTCCTTCTTTGCA
TCTTTAAAAACTTTAATCCCTAATTTTAAGCATTTTAGATTGCATTAAGAGAGAATTTCT
GTCTTCTACAGACATTTTCCTAGCATCATTTTGTGGTAGAAAACTGGCAGTCAAAAATCC
TCTTCAAAGGGAACTAAAAATTACTATATATTTTCAAGCCACTAATATGCTTTTTTTAAA
ATAATGTTCAATTCTTACTGCAATGTTTAATTAAATATTCACTTTTAAAACAAAGCAATT
GTTTATCAATGTCTTGGTGATAGGCCTTTAACGTCCCAAGAATGGGACGTTAAAAGCTTT
TCTCTAGCATAAAGGTTATACCACAATTATATGGAGTCATACAAATCGTAGAGTTGAAAG
GCAGATGTGAACCTCTTTTGTGGGCAGAAGTTATATTATTTAACTTTTGTGTCCTTAATT
TTGCTTTAGCACAGTGTGTGGTGAATATCTGTAGAGTAAGTGAATTAATGTTAACCAACT
CTTATTTTACAGATGAAAACTATTAAGATCAAGCTAGATTTGCACAAGATGTCATATCTA
AAACTCTTCTTTTTATTAACTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGACTTCAACATCAAAGTGATTTTCTCTACTCTCTTAGGAATGAAAGGAACACAGAAA
GACCCTGAAGCATTTCTTGTCCAGATTCTATCAAAATCACAATTGCCATCTGAGCACAGA
GAAGGTAAAGTGTTGTGGACTGGTTGGTTCTGCTGTATATTTGGAGACAGTCTTCTTGAG
ACTGTTTCAGAAGATTTCACCTGTCTACCCTTATTCCTTGCAAATGGAGCAGAGACTAAT
ACAGCAATAGTTGGAACCTGGTTTCAGAAAACTTTTGACTGTTATTTCCGTCCCTTAGCA
ATCAACGCATTTAACCTTTCCTGGATGGCTGCTATGTGGACTGCATGCAAAATGGACCGT
TATATGGCTACTACTGAATTTCTTTGGTCTGTACCCTGTAGCCCTCAAAGTCTGGACATT
TCTTATGCCATACATCCAGAAGATGCAAAAGCTTTGTGGGACAGTGTCCACAAAACACCT
GGGGAAGTTACCCAGGAGGAAGTTGACTTATTCATGGACTGCCTTTATTCACACTTCCAT
AGGCATTTCAAAATTCACTTATCAGCCACAAGATTGGTTCGTGTTTCAACGTCTGTAGCT
TCAGCACATACTGATGGAAAAATAAAGATTTTGTGTCATAAATACCTTATTGGAGTATTG
GCATATTTGACAGAACTGGCAATTTTTCAAATTGAGTGAGGACTTGTGGGGACCATAAGT
TATGGATTGTATACCTTTTCCTCACTGATTTTCTGCCTGGTTGCTTTGCTGAAAGGAACT
GTGAGAGAAATGGGCATCTGTCTCTGCATCTGTTTTCCTCACAGAGCCTTGGAGTTACCC
AGATGAAAACCAAGAAGAAGCTAGAAGAACTGAGAATGTGGAAGTGAATGAACCACGGCC
AGGCACTCATGTAACAGTCTTAGTCATCTGGGTTACCAGTCTCTAGAACATGCTGAGTTG
TTAATTTGTTGACCCTCTTTCTAAAAAGTATATAATGTGGAGTTCCCTTGTGGCTCAACA
TTTAAGAAACCAGCATTGTTACTTCTCTGGCTCTGATTAGAGCTGTGGCATGGATTCGAT
CCCTGTCCTGGGAACCTCTACATGCCATGGGTACAGCTGGAAAAAAAATGTAATGTTTAT
TATTTCAAACTTTTAGCATTCAAATGAGATATGTCCGATACTGAATATTCCTTCTTTGCA
TCTTTAAAAACTTTAATCCCTAATTTTAAGCATTTTAGATTGCATTAAGAGAGAATTTCT
GTCTTCTACAGACATTTTCCTAGCATCATTTTGTGGTAGAAAACTGGCAGTCAAAAATCC
TCTTCAAAGGGAACTAAAAATTACTATATATTTTCAAGCCACTAATATGCTTTTTTTAAA
ATAATGTTCAATTCTTACTGCAATGTTTAATTAAATATTCACTTTTAAAACAAAGCAATT
GTTTATCAATGTCTTGGTGATAGGCCTTTAACGTCCCAAGAATGGGACGTTAAAAGCTTT
TCTCTAGCATAAAGGTTATACCACAATTATATGGAGTCATACAAATCGTAGAGTTGAAAG
GCAGATGTGAACCTCTTTTGTGGGCAGAAGTTATATTATTTAACTTTTGTGTCCTTAATT
TTGCTTTAGCACAGTGTGTGGTGAATATCTGTAGAGTAAGTGAATTAATGTTAACCAACT
CTTATTTTACAGATGAAAACTATTAAGATCAAGCTAGATTTGCACAAGATGTCATATCTA
AAACTCTTCTTTTTATTAACTATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21620044|gb|AAH33154.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21620044|gb|AAH33154.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               362-1570, - strand, RNAz p=0.999471
               

               
               1178-1336, - strand, RNAz p=0.876383

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               362-1570, - strand, RNAz p=0.999471
               

               
               1178-1336, - strand, RNAz p=0.876383

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               83-630, gnl|bosTau2|chr16 (41829331-41828784)
               

               
               83-630, gnl|Hg17|chr1 (170504302-170503755)
               

               
               83-630, gnl|Mm7|chr1 (161045276-161045823)
               


               
               1178-1761, gnl|bosTau2|chr16 (41827228-41826642)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-630, gnl|bosTau2|chr16 (41829331-41828784)
               

               
               83-630, gnl|Hg17|chr1 (170504302-170503755)
               

               
               83-630, gnl|Mm7|chr1 (161045276-161045823)
               


               
               1178-1761, gnl|bosTau2|chr16 (41827228-41826642)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               mga (0.160205)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)

	362-1570, - strand, RNAz p=0.999471
	1178-1336, - strand, RNAz p=0.876383

	83-630, gnl\|bosTau2\|chr16 (41829331-41828784)
	83-630, gnl\|Hg17\|chr1 (170504302-170503755)
	83-630, gnl\|Mm7\|chr1 (161045276-161045823)

	1178-1761, gnl\|bosTau2\|chr16 (41827228-41826642)