Non-Coding RNA Search

Ss1.1-Pig4-TMW8061B10.3

Sequence:


               
               ATCAAAAGGGGATGGAGATTTTCCAGGAGTTTCCTATGTGGGCACGTCCCCAGGATCAGC
CTTAGAACAAGAACCTGACCTTCGGGGGCAGGTGGAGAACTCTGTGAAGGACGGAACTTC
AAGAGATCAACTATTTGAAGTCCCATGGGATCGCGGTGCTGGCAAAGAGTTGATACCGAC
ATGAGATGTCATGAGGAAATTCACTGCTCAGCCCATGCATTTCCATGGCTCCTTCAGACT
TGAGATATTAACAGTTGGAGCCAAAAGGAGAAAGGGTGTGAAGAATAAACTAGATCCCAG
AACTTCTGAGCCAATCAGGCGTTTTATTTCAAGAGACAAACCTAGACGTTTTAGGGACCA
CTGCAAGCTGTTTTATAAGCCCATGAGCCCATAATACTGGCAGTCTGCAGCAAGTCTCGA
AATGCTTGTGAAGAACTTACAGAGAAAGAAATGAAGAGCTTTCCAAATAGGATGATTTAC
TCTGAAGAAACAAAAACTGATATCCATAAAGCTCACAACTTAAAGCCCTCTCTTAACAGG
TGGGCACCCAGGCCACTGCTACAGCTTATTCTTTTATCCTTACTTTCACTTAATAGATAT
TTATTGAGTGCCCAGTGAGATGGTGCCACAATACCCAGTAGCATAAACAACAGATTTGTG
TTTACCAAGCTTTCATTCCTAAGTTACATGAATGGCATTTGCCTTCCATGAAATGCCTCT
CCATGCTACATATGTCATACTTTGTCTGCACCTAGCTTCTCCCATTAGGCAGCTCACTGC
CACAACACAACTATCTGCGTAATCAGCAGGTGAGCTCAGGTGCTTGCTGACTTGCGGAAT
CTTGTCGTGGGCGATGTGTTCATGCCGCTCTGGACTCAGTGAAGAACCGCTCGTGCTGAT
GAGCAGACTTACCACTTATACCTTAGCAATTTATTTAAATTATGTTTTGAGAGATAAACT
TGTCTGTTTGATATGCATTTTAATAATTAGAAATGGCTCTTGTAAGCAGGACATTTATCA
AAGAAGGACCTGCTATGCCTGTGTATGCAGTTGGAGAATTTTATCTGGCTGAAATAAATG
CATTTTGTAACAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAAAAGGGGATGGAGATTTTCCAGGAGTTTCCTATGTGGGCACGTCCCCAGGATCAGC
CTTAGAACAAGAACCTGACCTTCGGGGGCAGGTGGAGAACTCTGTGAAGGACGGAACTTC
AAGAGATCAACTATTTGAAGTCCCATGGGATCGCGGTGCTGGCAAAGAGTTGATACCGAC
ATGAGATGTCATGAGGAAATTCACTGCTCAGCCCATGCATTTCCATGGCTCCTTCAGACT
TGAGATATTAACAGTTGGAGCCAAAAGGAGAAAGGGTGTGAAGAATAAACTAGATCCCAG
AACTTCTGAGCCAATCAGGCGTTTTATTTCAAGAGACAAACCTAGACGTTTTAGGGACCA
CTGCAAGCTGTTTTATAAGCCCATGAGCCCATAATACTGGCAGTCTGCAGCAAGTCTCGA
AATGCTTGTGAAGAACTTACAGAGAAAGAAATGAAGAGCTTTCCAAATAGGATGATTTAC
TCTGAAGAAACAAAAACTGATATCCATAAAGCTCACAACTTAAAGCCCTCTCTTAACAGG
TGGGCACCCAGGCCACTGCTACAGCTTATTCTTTTATCCTTACTTTCACTTAATAGATAT
TTATTGAGTGCCCAGTGAGATGGTGCCACAATACCCAGTAGCATAAACAACAGATTTGTG
TTTACCAAGCTTTCATTCCTAAGTTACATGAATGGCATTTGCCTTCCATGAAATGCCTCT
CCATGCTACATATGTCATACTTTGTCTGCACCTAGCTTCTCCCATTAGGCAGCTCACTGC
CACAACACAACTATCTGCGTAATCAGCAGGTGAGCTCAGGTGCTTGCTGACTTGCGGAAT
CTTGTCGTGGGCGATGTGTTCATGCCGCTCTGGACTCAGTGAAGAACCGCTCGTGCTGAT
GAGCAGACTTACCACTTATACCTTAGCAATTTATTTAAATTATGTTTTGAGAGATAAACT
TGTCTGTTTGATATGCATTTTAATAATTAGAAATGGCTCTTGTAAGCAGGACATTTATCA
AAGAAGGACCTGCTATGCCTGTGTATGCAGTTGGAGAATTTTATCTGGCTGAAATAAATG
CATTTTGTAACAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               15-1049, gnl|bosTau2|chr10 (50030902-50029860)
               

               
               15-1049, gnl|Hg17|chr14 (61086348-61087392)
               

               
               15-1049, gnl|Mm7|chr12 (71729819-71730857)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               15-1049, gnl|bosTau2|chr10 (50030902-50029860)
               

               
               15-1049, gnl|Hg17|chr14 (61086348-61087392)
               

               
               15-1049, gnl|Mm7|chr12 (71729819-71730857)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

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               che (0.272628)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cli (0.152812)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               thg (0.126791)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.272628)
               

               
               cmu (0.186393)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               cli (0.152812)
               

               
               ski (0.146735)
               

               
               lnt (0.142308)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               thg (0.126791)

	15-1049, gnl\|bosTau2\|chr10 (50030902-50029860)
	15-1049, gnl\|Hg17\|chr14 (61086348-61087392)
	15-1049, gnl\|Mm7\|chr12 (71729819-71730857)

	che (0.272628)
	cmu (0.186393)
	sto (0.179824)
	gul (0.177588)
	sin (0.174948)
	duo (0.172801)
	cli (0.152812)
	ski (0.146735)
	lnt (0.142308)
	pla (0.133672)
	ova (0.129132)
	thg (0.126791)