Ss1.1-Pig4-TMW8061B11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGTCATAAACTTAGACCTGTAGATCAACTGAGGCATCTTCTTGTGAGTAATGTGGGTGG AGATGGAGAAGGGATTGAAAGATTCTTTAAATTACATCAGGAAGACCAGGCTTGTGCAAC TTGCCTTATTCTTGCTTGTTCCACTGCTGCCTGTGACAGAGAAGTATCTGCTTGGGCCAC CCGGGCTTTCTTCAGGTATGGTGGTGAAGCACAGATGAGATTTCCAACCGCTCTCCCCAC TCCGAGTAATGTTGGTCCCATCCTGGGGTCTCCTGTCTACTCAAGTTCTCCTGTTCCTAG TGGTAGTCCATATCCGAATCCCTCCTTTTTGGGAACACCATCTCAAGGGGTTCATCCTCC TGCTATGTCAACTCCAGTGTGTACTGTGGGAAACCCAGCAGCTCCTCCGGCCCCAAGTAT GAGTTGTATGACAGGAGCCGCGGGAGACAGCGCGCGCGGGCGGCTGAGCATGCTGCGGGG CGGCCCCGGCGGTCCTGCTCCGCGCACGCGCCCGCGGCCTCCCGGTGCTGACAGCGCGAG CGCGCGGCCCCGCGGGAGCAGCACGATTGAAAGTAGTGTTCCTTCCCAGCTTCTGGAGTC AGTGCTACAAGAGCTGAAAGGTTTGCAAGAATTTCTAGACAGAAACTCACAATTTGCAGG AGGACCATTAGGAAATCCAAGTACCACCGCCAAAGTGCAGCAGAGGCTGATAGGATTCAT GCGTCCTGAAAATGGAAATACCCAGCAAATGCAACAGGAGTTGCAAAGGAAATTTCATGA GGCTCAATTGAGTGAAAAGGTTTCACTTCAGGCAATCCAGCAGTTGGTTCGAAAATCATA CCAGGCTCTGGCTTTATGGAGACTTCTTTGTGAACATCAATTCACTGTCATTGTTGGAGA ACTTCAAAAGGAATTTCAAGAACAATTGAAAATCACCACCTTTAAAGACCTGGTAATCAG GGACAAGGAACTGACAGGGGCATTAATTGCTTCTCTAATCAACTGCTACATCAGAGATAA TGCTGCTGTCGATGGCATTAGTTTACACTTACAGGATATCTGCCCTCTTCTTTATAGCAC CGACGATGCAGTTTGTTCTAAGGCAAATGAGCTTCTCCAGCGTTCGCGACAAGTTCAAAA TAAGGTTGAAAAGGAAAAAATGTTAAGGGAATCATTAAAAGAGTATCAAAAAATCAGCAA TCAGGTGGACCTTTCCAATGTTTGTGCTCAATATAGACAAGTTCGTTTTTATGAGGGTGT GGTAGAGCTCTCTCTCACTGCCGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGTCATAAACTTAGACCTGTAGATCAACTGAGGCATCTTCTTGTGAGTAATGTGGGTGG AGATGGAGAAGGGATTGAAAGATTCTTTAAATTACATCAGGAAGACCAGGCTTGTGCAAC TTGCCTTATTCTTGCTTGTTCCACTGCTGCCTGTGACAGAGAAGTATCTGCTTGGGCCAC CCGGGCTTTCTTCAGGTATGGTGGTGAAGCACAGATGAGATTTCCAACCGCTCTCCCCAC TCCGAGTAATGTTGGTCCCATCCTGGGGTCTCCTGTCTACTCAAGTTCTCCTGTTCCTAG TGGTAGTCCATATCCGAATCCCTCCTTTTTGGGAACACCATCTCAAGGGGTTCATCCTCC TGCTATGTCAACTCCAGTGTGTACTGTGGGAAACCCAGCAGCTCCTCCGGCCCCAAGTAT GAGTTGTATGACAGGAGCCGCGGGAGACAGCGCGCGCGGGCGGCTGAGCATGCTGCGGGG CGGCCCCGGCGGTCCTGCTCCGCGCACGCGCCCGCGGCCTCCCGGTGCTGACAGCGCGAG CGCGCGGCCCCGCGGGAGCAGCACGATTGAAAGTAGTGTTCCTTCCCAGCTTCTGGAGTC AGTGCTACAAGAGCTGAAAGGTTTGCAAGAATTTCTAGACAGAAACTCACAATTTGCAGG AGGACCATTAGGAAATCCAAGTACCACCGCCAAAGTGCAGCAGAGGCTGATAGGATTCAT GCGTCCTGAAAATGGAAATACCCAGCAAATGCAACAGGAGTTGCAAAGGAAATTTCATGA GGCTCAATTGAGTGAAAAGGTTTCACTTCAGGCAATCCAGCAGTTGGTTCGAAAATCATA CCAGGCTCTGGCTTTATGGAGACTTCTTTGTGAACATCAATTCACTGTCATTGTTGGAGA ACTTCAAAAGGAATTTCAAGAACAATTGAAAATCACCACCTTTAAAGACCTGGTAATCAG GGACAAGGAACTGACAGGGGCATTAATTGCTTCTCTAATCAACTGCTACATCAGAGATAA TGCTGCTGTCGATGGCATTAGTTTACACTTACAGGATATCTGCCCTCTTCTTTATAGCAC CGACGATGCAGTTTGTTCTAAGGCAAATGAGCTTCTCCAGCGTTCGCGACAAGTTCAAAA TAAGGTTGAAAAGGAAAAAATGTTAAGGGAATCATTAAAAGAGTATCAAAAAATCAGCAA TCAGGTGGACCTTTCCAATGTTTGTGCTCAATATAGACAAGTTCGTTTTTATGAGGGTGT GGTAGAGCTCTCTCTCACTGCCGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 565-680, - strand, RNAz p=0.835352 | |
| 986-1103, - strand, RNAz p=0.62088 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 565-680, - strand, RNAz p=0.835352 | |
| 986-1103, - strand, RNAz p=0.62088 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 79-200, gnl|bosTau2|chr20 (24960851-24960972) | |
| 79-200, gnl|canFam2|chr4 (74567885-74567764) | |
| 79-200, gnl|danRer3|chrNA (91964692-91964799) | |
| 79-200, gnl|dasNov1|scaffold_6391 (37442-37563) | |
| 79-200, gnl|echTel1|scaffold_302236 (2546-2423) | |
| 79-200, gnl|fr1|chrUn (77703370-77703486) | |
| 79-200, gnl|galGal2|chrZ_random (10550789-10550938) | |
| 79-200, gnl|hg17|chr5 (37365877-37366011) | |
| 79-200, gnl|Hg17|chr5 (37366013-37365892) | |
| 79-200, gnl|mm7|chr15 (7958376-7958262) | |
| 79-200, gnl|Mm7|chr15 (7958254-7958374) | |
| 79-200, gnl|monDom2|scaffold_20 (34841298-34841168) | |
| 79-200, gnl|oryCun1|scaffold_161998 (7222-7351) | |
| 79-200, gnl|panTro1|chr4 (79391921-79391787) | |
| 79-200, gnl|rheMac2|chr6 (37171185-37171316) | |
| 79-200, gnl|rn3|chr2 (57662054-57661942) | |
| 79-200, gnl|tetNig1|chrUn_random (150125108-150125206) | |
| 79-200, gnl|xenTro1|scaffold_363 (884815-884702) | |
| 565-680, gnl|bosTau2|chr20 (24965344-24965459) | |
| 565-680, gnl|Hg17|chr5 (37359967-37359852) | |
| 565-680, gnl|Mm7|chr15 (7964666-7964781) | |
| 909-1103, gnl|bosTau2|chr20 (24971382-24971576) | |
| 909-1103, gnl|Hg17|chr5 (37346604-37346410) | |
| 909-1103, gnl|Mm7|chr15 (7969779-7969973) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 79-200, gnl|bosTau2|chr20 (24960851-24960972) | |
| 79-200, gnl|canFam2|chr4 (74567885-74567764) | |
| 79-200, gnl|danRer3|chrNA (91964692-91964799) | |
| 79-200, gnl|dasNov1|scaffold_6391 (37442-37563) | |
| 79-200, gnl|echTel1|scaffold_302236 (2546-2423) | |
| 79-200, gnl|fr1|chrUn (77703370-77703486) | |
| 79-200, gnl|galGal2|chrZ_random (10550789-10550938) | |
| 79-200, gnl|hg17|chr5 (37365877-37366011) | |
| 79-200, gnl|Hg17|chr5 (37366013-37365892) | |
| 79-200, gnl|mm7|chr15 (7958376-7958262) | |
| 79-200, gnl|Mm7|chr15 (7958254-7958374) | |
| 79-200, gnl|monDom2|scaffold_20 (34841298-34841168) | |
| 79-200, gnl|oryCun1|scaffold_161998 (7222-7351) | |
| 79-200, gnl|panTro1|chr4 (79391921-79391787) | |
| 79-200, gnl|rheMac2|chr6 (37171185-37171316) | |
| 79-200, gnl|rn3|chr2 (57662054-57661942) | |
| 79-200, gnl|tetNig1|chrUn_random (150125108-150125206) | |
| 79-200, gnl|xenTro1|scaffold_363 (884815-884702) | |
| 565-680, gnl|bosTau2|chr20 (24965344-24965459) | |
| 565-680, gnl|Hg17|chr5 (37359967-37359852) | |
| 565-680, gnl|Mm7|chr15 (7964666-7964781) | |
| 909-1103, gnl|bosTau2|chr20 (24971382-24971576) | |
| 909-1103, gnl|Hg17|chr5 (37346604-37346410) | |
| 909-1103, gnl|Mm7|chr15 (7969779-7969973) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ute (0.132784) | |
| cbr (0.127975) |