Non-Coding RNA Search

Ss1.1-Pig4-TMW8061C01.5

Sequence:


               
               GAGCGGTACGTGAAGCCGGGCAACAAGGAGCGCGGCTGGAACGATCCGCCGCAATTCTCA
TACGGGCTGCAGACCCAGGCTGGCGGACCCAAGCGGACGCCGCTCACCAAGAGGGTTGCC
CCTCCCCAGGATGGATTGCCCAGAGTCCCCACGTCAGAGATGTCACCTGGGGCCCCCGCA
GTGGGGCATCTGCCTCCTTCAAGTAAAGCTTCCAGGCCTCCACTTGGAGGGAGTTGTCCT
CCCTCCAGCATGGAGCCCACACAGTGCTCCGTCGTTGAGTTGGAGATTCTGCTGGAAGAT
GTACTGAGCCCTCTGGAACGAGCATTGGAGGACTGCCGTGGCCACACAAAGAAGCAAGTA
TGTGATGACATAAACCGACGCCTGGCTTTGCTGCAGGAACAGTGGGCTGGGGGGAAGCTG
TCAGTGCCTGTGAAGAAGAGGATGGCTCTGCTGGTACAAGAGCTTTCAAGCCACCAGTGG
GACGCAGCAGATGACATCCACCGCTCGCTCATGGTTGACCATGTGACCGAGGTCAGTCAG
TGGATGGTGGGAGTTAAAAGATTAATTGCGGAAAAGAGGAGTCTTTCTTCAGAAGAGGAG
GCCAATGAAGGGAAATCTACAGCCGCAGCTGAGCAGAACCAGACCTTGCCAGGCATCCCA
CACACCCCATAGTCCTGTGGGCTCCCGTCTCCTCTCACACCACTCCCATGCCTTGGCACG
GGAGGCCTTCTCTAACTCTGCTCCCTTGTACCACTTGGGAGACTGCCTGTTCCACTGAGG
TCTTTGGCCTGACCCTTCTCTGGGCCACGGGGAGGTCACTTGTTACCTATACTGTAAGCA
GTTCAATAAAAACATCTCCACGTGGTGGGCGCTGGGTAGGAGAGATGAGCCCTTCCGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGGTACGTGAAGCCGGGCAACAAGGAGCGCGGCTGGAACGATCCGCCGCAATTCTCA
TACGGGCTGCAGACCCAGGCTGGCGGACCCAAGCGGACGCCGCTCACCAAGAGGGTTGCC
CCTCCCCAGGATGGATTGCCCAGAGTCCCCACGTCAGAGATGTCACCTGGGGCCCCCGCA
GTGGGGCATCTGCCTCCTTCAAGTAAAGCTTCCAGGCCTCCACTTGGAGGGAGTTGTCCT
CCCTCCAGCATGGAGCCCACACAGTGCTCCGTCGTTGAGTTGGAGATTCTGCTGGAAGAT
GTACTGAGCCCTCTGGAACGAGCATTGGAGGACTGCCGTGGCCACACAAAGAAGCAAGTA
TGTGATGACATAAACCGACGCCTGGCTTTGCTGCAGGAACAGTGGGCTGGGGGGAAGCTG
TCAGTGCCTGTGAAGAAGAGGATGGCTCTGCTGGTACAAGAGCTTTCAAGCCACCAGTGG
GACGCAGCAGATGACATCCACCGCTCGCTCATGGTTGACCATGTGACCGAGGTCAGTCAG
TGGATGGTGGGAGTTAAAAGATTAATTGCGGAAAAGAGGAGTCTTTCTTCAGAAGAGGAG
GCCAATGAAGGGAAATCTACAGCCGCAGCTGAGCAGAACCAGACCTTGCCAGGCATCCCA
CACACCCCATAGTCCTGTGGGCTCCCGTCTCCTCTCACACCACTCCCATGCCTTGGCACG
GGAGGCCTTCTCTAACTCTGCTCCCTTGTACCACTTGGGAGACTGCCTGTTCCACTGAGG
TCTTTGGCCTGACCCTTCTCTGGGCCACGGGGAGGTCACTTGTTACCTATACTGTAAGCA
GTTCAATAAAAACATCTCCACGTGGTGGGCGCTGGGTAGGAGAGATGAGCCCTTCCGATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|18027814|gb|AAL55868.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|18027814|gb|AAL55868.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               144-299, - strand, RNAz p=0.990699
               

               
               195-346, - strand, RNAz p=0.941668
               

               
               459-617, + strand, RNAz p=0.985874

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               144-299, - strand, RNAz p=0.990699
               

               
               195-346, - strand, RNAz p=0.941668
               

               
               459-617, + strand, RNAz p=0.985874

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK054960, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK054960, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               144-351, gnl|bosTau2|chr7 (30578466-30578676)
               

               
               144-351, gnl|canFam2|chr2 (38596432-38596703)
               

               
               144-351, gnl|dasNov1|scaffold_8408 (60436-60702)
               

               
               144-351, gnl|echTel1|scaffold_310163 (36964-36688)
               

               
               144-351, gnl|hg17|chr5 (139911730-139911993)
               

               
               144-351, gnl|Hg17|chr5 (139911955-139911751)
               

               
               144-351, gnl|loxAfr1|scaffold_50254 (18776-18493)
               

               
               144-351, gnl|mm7|chr18 (37044835-37045084)
               

               
               144-351, gnl|Mm7|chr18 (37045054-37044856)
               

               
               144-351, gnl|monDom2|scaffold_6 (68217392-68217152)
               

               
               144-351, gnl|oryCun1|scaffold_206493 (43724-43465)
               

               
               144-351, gnl|panTro1|chr4 (146529041-146529304)
               

               
               144-351, gnl|rheMac2|chr6 (136967166-136967429)
               

               
               144-351, gnl|rn3|chr18 (29334428-29334671)
               


               
               459-890, gnl|bosTau2|chr7 (30579396-30579844)
               

               
               459-890, gnl|Hg17|chr5 (139910682-139910256)
               

               
               459-890, gnl|Mm7|chr18 (37043865-37043448)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               144-351, gnl|bosTau2|chr7 (30578466-30578676)
               

               
               144-351, gnl|canFam2|chr2 (38596432-38596703)
               

               
               144-351, gnl|dasNov1|scaffold_8408 (60436-60702)
               

               
               144-351, gnl|echTel1|scaffold_310163 (36964-36688)
               

               
               144-351, gnl|hg17|chr5 (139911730-139911993)
               

               
               144-351, gnl|Hg17|chr5 (139911955-139911751)
               

               
               144-351, gnl|loxAfr1|scaffold_50254 (18776-18493)
               

               
               144-351, gnl|mm7|chr18 (37044835-37045084)
               

               
               144-351, gnl|Mm7|chr18 (37045054-37044856)
               

               
               144-351, gnl|monDom2|scaffold_6 (68217392-68217152)
               

               
               144-351, gnl|oryCun1|scaffold_206493 (43724-43465)
               

               
               144-351, gnl|panTro1|chr4 (146529041-146529304)
               

               
               144-351, gnl|rheMac2|chr6 (136967166-136967429)
               

               
               144-351, gnl|rn3|chr18 (29334428-29334671)
               


               
               459-890, gnl|bosTau2|chr7 (30579396-30579844)
               

               
               459-890, gnl|Hg17|chr5 (139910682-139910256)
               

               
               459-890, gnl|Mm7|chr18 (37043865-37043448)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               nlu (0.383362)
               

               
               cje (0.330469)
               

               
               nmm (0.265604)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.383362)
               

               
               cje (0.330469)
               

               
               nmm (0.265604)
               

               
               ece (0.229305)
               

               
               nms (0.213858)
               

               
               ton (0.1755)
               

               
               eye (0.170503)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               eep (0.122564)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	144-299, - strand, RNAz p=0.990699
	195-346, - strand, RNAz p=0.941668
	459-617, + strand, RNAz p=0.985874

	144-351, gnl\|bosTau2\|chr7 (30578466-30578676)
	144-351, gnl\|canFam2\|chr2 (38596432-38596703)
	144-351, gnl\|dasNov1\|scaffold_8408 (60436-60702)
	144-351, gnl\|echTel1\|scaffold_310163 (36964-36688)
	144-351, gnl\|hg17\|chr5 (139911730-139911993)
	144-351, gnl\|Hg17\|chr5 (139911955-139911751)
	144-351, gnl\|loxAfr1\|scaffold_50254 (18776-18493)
	144-351, gnl\|mm7\|chr18 (37044835-37045084)
	144-351, gnl\|Mm7\|chr18 (37045054-37044856)
	144-351, gnl\|monDom2\|scaffold_6 (68217392-68217152)
	144-351, gnl\|oryCun1\|scaffold_206493 (43724-43465)
	144-351, gnl\|panTro1\|chr4 (146529041-146529304)
	144-351, gnl\|rheMac2\|chr6 (136967166-136967429)
	144-351, gnl\|rn3\|chr18 (29334428-29334671)

	459-890, gnl\|bosTau2\|chr7 (30579396-30579844)
	459-890, gnl\|Hg17\|chr5 (139910682-139910256)
	459-890, gnl\|Mm7\|chr18 (37043865-37043448)

	nlu (0.383362)
	cje (0.330469)
	nmm (0.265604)
	ece (0.229305)
	nms (0.213858)
	ton (0.1755)
	eye (0.170503)
	nje (0.16592)
	nco (0.161734)
	csp (0.161186)
	cag (0.151194)
	hyp (0.142837)
	cov (0.132153)
	eep (0.122564)
	ecc (0.115035)
	jca (0.11396)
	cty (0.10408)