Ss1.1-Pig4-TMW8061C09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGAGCGGCGGCGGCCACTGCCACGTCTTCCCGGCAGTGGCGGCGGCGGCGGCGCGGGAGG AGGAATAATCCAGGTCGCCTTCACTGGAAATCAGTTTGCTGAAACTATTGATACGCAGAT CTTAACGCTGAAGAAAAGGAGGTCCTGCGCCTTGACCACACAAGCGTGGCCCTTCCTCCA GACCCCCGCTCCGGACGCGCCCACCTAGCGTCTCCCAGGAACCATGCGGCAGCTCAAGGG GAAGCCCAAGAAGGAGACGTCCAAGGACAAGAAGGAGCGGAAGCAGGCCATGCAGGAGGC CCGGCAGCAGATCACCACCGTGGTGCTGCCCACGCTGGCCGTGGTCGTGGTCCTGATCGT GGTGTTTGTGTACGTGGCCACGCGCCCCACCATCACCGAGTGAGGGCCCGCCCCGAGGGA GGAGGCTCGGGAGGGGAGAGCAGAAGAAGGGCCTTCATCCGCTGCGATTTTCCTGATGCC GAGCTCTGAGCAGGAGCCCCCGTCTCCTCTGGTCTGTGACTTGATTAAAGGTTCTCCACT TTTCTCGGGAGGGAATAGGAAACGTTTTATCAGTGAACGTGCCATACACCTTATGGTCCA CTTCATGTGCCTTTCAGACTTCAAAGCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT TTCTCGCCTGCAATCGATGTGTAGCCCCACCTGGTGAGAGGAGGCGTCTCTGGGTCACGG ATCAGTTGGAATCAGTGCTCACCCCATCCCCGTTGTTTTGAACATGACTTTCCTACACGT GTTCACAATTTCCAAAGGGACTGTGTTTCTTCTCTGTGCTTCATGTGATTTGAAATATGT CGACTCAGAAGTGAAATATTTATTTTTTGAATAAAGGAGATGATAGCCTTAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGAGCGGCGGCGGCCACTGCCACGTCTTCCCGGCAGTGGCGGCGGCGGCGGCGCGGGAGG AGGAATAATCCAGGTCGCCTTCACTGGAAATCAGTTTGCTGAAACTATTGATACGCAGAT CTTAACGCTGAAGAAAAGGAGGTCCTGCGCCTTGACCACACAAGCGTGGCCCTTCCTCCA GACCCCCGCTCCGGACGCGCCCACCTAGCGTCTCCCAGGAACCATGCGGCAGCTCAAGGG GAAGCCCAAGAAGGAGACGTCCAAGGACAAGAAGGAGCGGAAGCAGGCCATGCAGGAGGC CCGGCAGCAGATCACCACCGTGGTGCTGCCCACGCTGGCCGTGGTCGTGGTCCTGATCGT GGTGTTTGTGTACGTGGCCACGCGCCCCACCATCACCGAGTGAGGGCCCGCCCCGAGGGA GGAGGCTCGGGAGGGGAGAGCAGAAGAAGGGCCTTCATCCGCTGCGATTTTCCTGATGCC GAGCTCTGAGCAGGAGCCCCCGTCTCCTCTGGTCTGTGACTTGATTAAAGGTTCTCCACT TTTCTCGGGAGGGAATAGGAAACGTTTTATCAGTGAACGTGCCATACACCTTATGGTCCA CTTCATGTGCCTTTCAGACTTCAAAGCCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT TTCTCGCCTGCAATCGATGTGTAGCCCCACCTGGTGAGAGGAGGCGTCTCTGGGTCACGG ATCAGTTGGAATCAGTGCTCACCCCATCCCCGTTGTTTTGAACATGACTTTCCTACACGT GTTCACAATTTCCAAAGGGACTGTGTTTCTTCTCTGTGCTTCATGTGATTTGAAATATGT CGACTCAGAAGTGAAATATTTATTTTTTGAATAAAGGAGATGATAGCCTTAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 137-407, gnl|bosTau2|chr29 (73112-73378) | |
| 137-407, gnl|canFam2|chr21 (10226916-10226719) | |
| 137-407, gnl|dasNov1|scaffold_67868 (934-740) | |
| 137-407, gnl|echTel1|scaffold_311798 (9167-8970) | |
| 137-407, gnl|fr1|chrUn (311843505-311843706) | |
| 137-407, gnl|galGal2|chr1 (177715402-177715210) | |
| 137-407, gnl|hg17|chr11 (92851820-92852017) | |
| 137-407, gnl|Hg17|chr11 (92852085-92851768) | |
| 137-407, gnl|loxAfr1|scaffold_13145 (27523-27719) | |
| 137-407, gnl|mm7|chr9 (15383536-15383339) | |
| 137-407, gnl|Mm7|chr9 (15383267-15383532) | |
| 137-407, gnl|monDom2|scaffold_15 (4678563-4678366) | |
| 137-407, gnl|oryCun1|scaffold_174350 (90507-90310) | |
| 137-407, gnl|panTro1|chr9_random (42116157-42115960) | |
| 137-407, gnl|rheMac2|chr14 (92033473-92033670) | |
| 137-407, gnl|rn3|chr8 (12347498-12347301) | |
| 137-407, gnl|tetNig1|chr16 (8975199-8975380) | |
| 137-407, gnl|xenTro1|scaffold_645 (134466-134275) | |
| 481-660, gnl|bosTau2|chr29 (73412-73593) | |
| 481-660, gnl|Hg17|chr11 (92851723-92851543) | |
| 481-660, gnl|Mm7|chr9 (15383566-15383766) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 137-407, gnl|bosTau2|chr29 (73112-73378) | |
| 137-407, gnl|canFam2|chr21 (10226916-10226719) | |
| 137-407, gnl|dasNov1|scaffold_67868 (934-740) | |
| 137-407, gnl|echTel1|scaffold_311798 (9167-8970) | |
| 137-407, gnl|fr1|chrUn (311843505-311843706) | |
| 137-407, gnl|galGal2|chr1 (177715402-177715210) | |
| 137-407, gnl|hg17|chr11 (92851820-92852017) | |
| 137-407, gnl|Hg17|chr11 (92852085-92851768) | |
| 137-407, gnl|loxAfr1|scaffold_13145 (27523-27719) | |
| 137-407, gnl|mm7|chr9 (15383536-15383339) | |
| 137-407, gnl|Mm7|chr9 (15383267-15383532) | |
| 137-407, gnl|monDom2|scaffold_15 (4678563-4678366) | |
| 137-407, gnl|oryCun1|scaffold_174350 (90507-90310) | |
| 137-407, gnl|panTro1|chr9_random (42116157-42115960) | |
| 137-407, gnl|rheMac2|chr14 (92033473-92033670) | |
| 137-407, gnl|rn3|chr8 (12347498-12347301) | |
| 137-407, gnl|tetNig1|chr16 (8975199-8975380) | |
| 137-407, gnl|xenTro1|scaffold_645 (134466-134275) | |
| 481-660, gnl|bosTau2|chr29 (73412-73593) | |
| 481-660, gnl|Hg17|chr11 (92851723-92851543) | |
| 481-660, gnl|Mm7|chr9 (15383566-15383766) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| sag (0.36543) | |
| sto (0.359648) | |
| nje (0.33184) | |
| cje (0.330469) | |
| pty (0.285429) | |
| med (0.232504) | |
| col (0.195008) | |
| nep (0.183925) | |
| ill (0.175593) | |
| eye (0.170503) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eru (0.120048) | |
| jej (0.0989218) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sag (0.36543) | |
| sto (0.359648) | |
| nje (0.33184) | |
| cje (0.330469) | |
| pty (0.285429) | |
| med (0.232504) | |
| col (0.195008) | |
| nep (0.183925) | |
| ill (0.175593) | |
| eye (0.170503) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| cov (0.132153) | |
| thg (0.126791) | |
| ese (0.126502) | |
| eru (0.120048) | |
| jej (0.0989218) |