Non-Coding RNA Search

Ss1.1-Pig4-TMW8061C12.5

Sequence:


               
               ATTGACACGCACAGATAGAACCCAAAGAAAGGCAAAGAGTCCTGCCCGGCACCGGCGCCG
CGCGGGCCGAACCTGCGCCCCGGGGAGCGGCGCGCAGAGGGCACCGGGCGCCCGGAACAG
GCGGCGCAGCACCAGCACTGAGTGAGGCCACCGTGTCAGCAAGCTGAGAGGGAAACTAAG
GCAAGATGTCGGGCCGGAGCGGGAAGAAGAAAATGTCCAAGCTGTCGCGTTCAGCCAGGG
CCGGGGTCATCTTCCCGGTGGGGAGGCTGATGCGGTACCTAAAGAAAGGGACATTCAAAT
ACCGGATCAGCGTGGGTGCGCCCGTCTATATGGCTGCGGTCATCGAATACCTGGCAGCGG
AAATTCTGGAATTGGCTGGGAATGCGGCAAGGGACAACAAGAAAGCCCGGATAGCCCCAA
GACACATCCTGCTGGCTGTTGCCAATGACGAGGAACTCAATCAGCTGCTAAAAGGAGTGA
CCATTGCCAGCGGAGGTGTCCTGCCCAGAATTCACCCTGAACTGCTGGCCAAAAAGCGAG
GGACCAAAGGCAAGTCGGAAACTATCCTCTCCCCTCCCCCAGAGAAGAGAGGAAGAAAGG
CCACGTCGGGCAAGAAAGGGGGCAAGAAGTCCAAGGCCGCCAAACCACGGTCATCCAAAA
AGTCCAAACCAAAGGACAGTGATAAAGAAGGAACTTCAAATTCCACCTCTGAAGATGGGC
CGGGGGATGGATTCACCATTCTGTCTTCTAAAAGCCTTGTTCTAGGGCAGAAGCTGTCCT
TGACCCAGAGTGACATCAGCCATATTGGCTCCATGAGAGTGGAGGGCATTGTCCACCCAA
CCACAGCCGAAATTGACCTCAAGGAAGATATAGGTAAAGCCTTGGAAAGGCTGGAGGCAA
AGAGTTCTTGGAAACGGTAAAGGAGCTTCGCAAGTCCCAGGGCCCAAATGGAAGTAGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGACACGCACAGATAGAACCCAAAGAAAGGCAAAGAGTCCTGCCCGGCACCGGCGCCG
CGCGGGCCGAACCTGCGCCCCGGGGAGCGGCGCGCAGAGGGCACCGGGCGCCCGGAACAG
GCGGCGCAGCACCAGCACTGAGTGAGGCCACCGTGTCAGCAAGCTGAGAGGGAAACTAAG
GCAAGATGTCGGGCCGGAGCGGGAAGAAGAAAATGTCCAAGCTGTCGCGTTCAGCCAGGG
CCGGGGTCATCTTCCCGGTGGGGAGGCTGATGCGGTACCTAAAGAAAGGGACATTCAAAT
ACCGGATCAGCGTGGGTGCGCCCGTCTATATGGCTGCGGTCATCGAATACCTGGCAGCGG
AAATTCTGGAATTGGCTGGGAATGCGGCAAGGGACAACAAGAAAGCCCGGATAGCCCCAA
GACACATCCTGCTGGCTGTTGCCAATGACGAGGAACTCAATCAGCTGCTAAAAGGAGTGA
CCATTGCCAGCGGAGGTGTCCTGCCCAGAATTCACCCTGAACTGCTGGCCAAAAAGCGAG
GGACCAAAGGCAAGTCGGAAACTATCCTCTCCCCTCCCCCAGAGAAGAGAGGAAGAAAGG
CCACGTCGGGCAAGAAAGGGGGCAAGAAGTCCAAGGCCGCCAAACCACGGTCATCCAAAA
AGTCCAAACCAAAGGACAGTGATAAAGAAGGAACTTCAAATTCCACCTCTGAAGATGGGC
CGGGGGATGGATTCACCATTCTGTCTTCTAAAAGCCTTGTTCTAGGGCAGAAGCTGTCCT
TGACCCAGAGTGACATCAGCCATATTGGCTCCATGAGAGTGGAGGGCATTGTCCACCCAA
CCACAGCCGAAATTGACCTCAAGGAAGATATAGGTAAAGCCTTGGAAAGGCTGGAGGCAA
AGAGTTCTTGGAAACGGTAAAGGAGCTTCGCAAGTCCCAGGGCCCAAATGGAAGTAGCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9CTR1_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9CTR1_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               238-356, - strand, RNAz p=0.99998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-356, - strand, RNAz p=0.99998

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               1-135, gnl|bosTau2|chr28 (19543800-19543667)
               

               
               1-135, gnl|dasNov1|scaffold_13734 (59287-58999)
               

               
               1-135, gnl|echTel1|scaffold_234535 (4045-3756)
               

               
               1-135, gnl|hg17|chr10 (71482563-71482855)
               

               
               1-135, gnl|Hg17|chr10 (71482629-71482762)
               

               
               1-135, gnl|mm7|chr10 (61302440-61302147)
               

               
               1-135, gnl|Mm7|chr10 (61302372-61302241)
               

               
               1-135, gnl|oryCun1|scaffold_149578 (11968-12241)
               

               
               1-135, gnl|panTro1|chr8 (72651265-72651557)
               

               
               1-135, gnl|rheMac2|chr9 (66962338-66962046)
               

               
               1-135, gnl|rn3|chr20 (29168353-29168059)
               


               
               224-551, gnl|bosTau2|chr23 (24222879-24222547)
               

               
               224-551, gnl|Hg17|chr6 (26232487-26232819)
               

               
               224-551, gnl|Mm7|chr13 (23049672-23049340)
               


               
               238-536, gnl|bosTau2|chr13 (49673836-49674134)
               

               
               238-536, gnl|Hg17|chr6 (27884028-27884326)
               

               
               238-536, gnl|Mm7|chr13 (21082472-21082770)
               


               
               772-877, gnl|bosTau2|chr28 (19471106-19471001)
               

               
               772-877, gnl|Hg17|chr10 (71525414-71525519)
               

               
               772-877, gnl|Mm7|chr10 (61266231-61266126)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-135, gnl|bosTau2|chr28 (19543800-19543667)
               

               
               1-135, gnl|dasNov1|scaffold_13734 (59287-58999)
               

               
               1-135, gnl|echTel1|scaffold_234535 (4045-3756)
               

               
               1-135, gnl|hg17|chr10 (71482563-71482855)
               

               
               1-135, gnl|Hg17|chr10 (71482629-71482762)
               

               
               1-135, gnl|mm7|chr10 (61302440-61302147)
               

               
               1-135, gnl|Mm7|chr10 (61302372-61302241)
               

               
               1-135, gnl|oryCun1|scaffold_149578 (11968-12241)
               

               
               1-135, gnl|panTro1|chr8 (72651265-72651557)
               

               
               1-135, gnl|rheMac2|chr9 (66962338-66962046)
               

               
               1-135, gnl|rn3|chr20 (29168353-29168059)
               


               
               224-551, gnl|bosTau2|chr23 (24222879-24222547)
               

               
               224-551, gnl|Hg17|chr6 (26232487-26232819)
               

               
               224-551, gnl|Mm7|chr13 (23049672-23049340)
               


               
               238-536, gnl|bosTau2|chr13 (49673836-49674134)
               

               
               238-536, gnl|Hg17|chr6 (27884028-27884326)
               

               
               238-536, gnl|Mm7|chr13 (21082472-21082770)
               


               
               772-877, gnl|bosTau2|chr28 (19471106-19471001)
               

               
               772-877, gnl|Hg17|chr10 (71525414-71525519)
               

               
               772-877, gnl|Mm7|chr10 (61266231-61266126)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ece (0.229305)
               

               
               cov (0.132153)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               cov (0.132153)

	1-135, gnl\|bosTau2\|chr28 (19543800-19543667)
	1-135, gnl\|dasNov1\|scaffold_13734 (59287-58999)
	1-135, gnl\|echTel1\|scaffold_234535 (4045-3756)
	1-135, gnl\|hg17\|chr10 (71482563-71482855)
	1-135, gnl\|Hg17\|chr10 (71482629-71482762)
	1-135, gnl\|mm7\|chr10 (61302440-61302147)
	1-135, gnl\|Mm7\|chr10 (61302372-61302241)
	1-135, gnl\|oryCun1\|scaffold_149578 (11968-12241)
	1-135, gnl\|panTro1\|chr8 (72651265-72651557)
	1-135, gnl\|rheMac2\|chr9 (66962338-66962046)
	1-135, gnl\|rn3\|chr20 (29168353-29168059)

	224-551, gnl\|bosTau2\|chr23 (24222879-24222547)
	224-551, gnl\|Hg17\|chr6 (26232487-26232819)
	224-551, gnl\|Mm7\|chr13 (23049672-23049340)

	238-536, gnl\|bosTau2\|chr13 (49673836-49674134)
	238-536, gnl\|Hg17\|chr6 (27884028-27884326)
	238-536, gnl\|Mm7\|chr13 (21082472-21082770)

	772-877, gnl\|bosTau2\|chr28 (19471106-19471001)
	772-877, gnl\|Hg17\|chr10 (71525414-71525519)
	772-877, gnl\|Mm7\|chr10 (61266231-61266126)