Non-Coding RNA Search

Ss1.1-Pig4-TMW8061C19.5

Sequence:


               
               TCTTCTTGATTTTTCTTTTTTTAATGAAAAGTGTTATTTTCAGGCTCCATGCAACAGTGG
ATTGTATAAACCAGTATTTCATCCCTTTCTTGATCCTACGAGAGAGAGAAGTGTTCTCAG
TTTTGTTTTTCTATTTCCAAAAGCAATTCTTGGGTTTTTGTTTTTAATGGAAAAGACAAA
CCCCGTGTTGATCTTGACCAAATGCGTTTTGCACAGGTATGAAGCCTCCGTTTCTGCAGT
GGCCCTTCTTAAAGAGGTGGCTCTGCTCTCCCTGCATCGGACTCCCAGTCGTGCCCTCAC
CTCCCACCTTGGCCCAGCCCGACTTGGCACTGCACTTACCTGTGATGACTGCCGCAAGTT
GTGAGTGGCGGGCTGGACAGGTGGCCTTTGCATTCTCTGCCCTCTCGTGGTCCCTGCAGA
CGGCCTGAGGCAGGAGATGGGGGCCAGCATGGTCCTGCTGGAGGTGGGGCCACGGGAGAC
TGCCAAGCAGTAGCATTAGCCCTCTGGGTTCAGCCTCGAAGCGGGCCTGGGCCCTGGGCC
CTTTTCTATACGTACCCACTACTTCTGTCTCTTTCTCTGTTTGTAGCTGAGAGTGGAGGC
CCCGTGGCTGGGGCAGTGTAGGTGGTGGGGCCCAGCCCTGCCTCCCAAGTCTCCTCCTTA
CCCTGGCCGTTGCATTGGTTCAGCTGCCACTCCCAGCCCCCTCGTCCCTTGGAAGCCTGC
CCTGTGCTCATCTTGCCCACACCTCCTACTGAGAAACTTGCAGCCATTTCAATCCCAGGG
CAGGGGGATGGCGAGGATGGACAAGGAAAGGGTTGTGAGGCTCTGTCCACCCCCTACCCT
GTATCCACAGAACAAAGCCACGGATTCCGTTAGCCGCCTCCAGTTCTGTTCCTTCTCCAG
CCTCCGTTCTCCCAGGTGTCAGGACTGCATGGGGGCCCGGGAGGGGTGAGGGGGTTGGCT
GGGGTCCCTGAGCGAGCCAGCACTCAGCGTGTGAGCGAGGCCACGGAAACTCCGCCCCCA
CCGCATCTTACCTCACAGGGGTGGTTTTCAGGGATTCTTTAAGGCAGCAGATGAAAATCT
TGCCACAGCCGAGAAATTGACAAAAAGCTTCCATGCTGTACATGGTTCTCTTTCTCTCTC
TTTTTTATCTTTGAAAAGAAAAACCCAGAAAGATGCATCAGATTTGTGTAAATGAGGGTA
TGCCAAAAGGGTGGCCAGTTTTGCTTTATGATCTTATGAAGGAAAATTTGTGACCCTACA
TATATATACACATACATACATATATATATATCCCGAACCAGCAACGGGACTTTGTTTATA
TTGCAAATAAATATTATTTTTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTCTTGATTTTTCTTTTTTTAATGAAAAGTGTTATTTTCAGGCTCCATGCAACAGTGG
ATTGTATAAACCAGTATTTCATCCCTTTCTTGATCCTACGAGAGAGAGAAGTGTTCTCAG
TTTTGTTTTTCTATTTCCAAAAGCAATTCTTGGGTTTTTGTTTTTAATGGAAAAGACAAA
CCCCGTGTTGATCTTGACCAAATGCGTTTTGCACAGGTATGAAGCCTCCGTTTCTGCAGT
GGCCCTTCTTAAAGAGGTGGCTCTGCTCTCCCTGCATCGGACTCCCAGTCGTGCCCTCAC
CTCCCACCTTGGCCCAGCCCGACTTGGCACTGCACTTACCTGTGATGACTGCCGCAAGTT
GTGAGTGGCGGGCTGGACAGGTGGCCTTTGCATTCTCTGCCCTCTCGTGGTCCCTGCAGA
CGGCCTGAGGCAGGAGATGGGGGCCAGCATGGTCCTGCTGGAGGTGGGGCCACGGGAGAC
TGCCAAGCAGTAGCATTAGCCCTCTGGGTTCAGCCTCGAAGCGGGCCTGGGCCCTGGGCC
CTTTTCTATACGTACCCACTACTTCTGTCTCTTTCTCTGTTTGTAGCTGAGAGTGGAGGC
CCCGTGGCTGGGGCAGTGTAGGTGGTGGGGCCCAGCCCTGCCTCCCAAGTCTCCTCCTTA
CCCTGGCCGTTGCATTGGTTCAGCTGCCACTCCCAGCCCCCTCGTCCCTTGGAAGCCTGC
CCTGTGCTCATCTTGCCCACACCTCCTACTGAGAAACTTGCAGCCATTTCAATCCCAGGG
CAGGGGGATGGCGAGGATGGACAAGGAAAGGGTTGTGAGGCTCTGTCCACCCCCTACCCT
GTATCCACAGAACAAAGCCACGGATTCCGTTAGCCGCCTCCAGTTCTGTTCCTTCTCCAG
CCTCCGTTCTCCCAGGTGTCAGGACTGCATGGGGGCCCGGGAGGGGTGAGGGGGTTGGCT
GGGGTCCCTGAGCGAGCCAGCACTCAGCGTGTGAGCGAGGCCACGGAAACTCCGCCCCCA
CCGCATCTTACCTCACAGGGGTGGTTTTCAGGGATTCTTTAAGGCAGCAGATGAAAATCT
TGCCACAGCCGAGAAATTGACAAAAAGCTTCCATGCTGTACATGGTTCTCTTTCTCTCTC
TTTTTTATCTTTGAAAAGAAAAACCCAGAAAGATGCATCAGATTTGTGTAAATGAGGGTA
TGCCAAAAGGGTGGCCAGTTTTGCTTTATGATCTTATGAAGGAAAATTTGTGACCCTACA
TATATATACACATACATACATATATATATATCCCGAACCAGCAACGGGACTTTGTTTATA
TTGCAAATAAATATTATTTTTTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1175-1268, - strand, RNAz p=0.86894

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1175-1268, - strand, RNAz p=0.86894

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               837-1344, gnl|bosTau2|chr16 (31105091-31105571)
               

               
               837-1344, gnl|Hg17|chr3 (52058489-52057990)
               

               
               837-1344, gnl|Mm7|chr2 (18005864-18006417)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               837-1344, gnl|bosTau2|chr16 (31105091-31105571)
               

               
               837-1344, gnl|Hg17|chr3 (52058489-52057990)
               

               
               837-1344, gnl|Mm7|chr2 (18005864-18006417)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cga (0.837287)
               

               
               nco (0.485201)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.837287)
               

               
               nco (0.485201)
               

               
               fce (0.271592)
               

               
               cov (0.264306)
               

               
               sin (0.174948)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)

	837-1344, gnl\|bosTau2\|chr16 (31105091-31105571)
	837-1344, gnl\|Hg17\|chr3 (52058489-52057990)
	837-1344, gnl\|Mm7\|chr2 (18005864-18006417)

	cga (0.837287)
	nco (0.485201)
	fce (0.271592)
	cov (0.264306)
	sin (0.174948)
	cje (0.165235)
	cli (0.152812)
	hyp (0.142837)
	pla (0.133672)