Non-Coding RNA Search

Ss1.1-Pig4-TMW8061C20.3.5

Sequence:


               
               AAGATGTCTCATCTCAACCGCGGGAGGGAGCCCCAGAAGATGCCTGTCTGGGGGCAGTGG
CGCGAGGGTGGAAGGAGGGAGGAGAAGGGCGGGGCGCGGAGGCCCGAACGAGGGACCAGA
CGCCGACTCTGACTTTTTCCGCCGCTCTCGGCTTCAGGCATCTCAGCTGCCCCTGTGCCG
ACCTCTTGAAGTCACTATCTCCTGACGTCCCCACCCCAGACTTCCAACTCAGCCATGTCA
CTCCTCCTGCTGGTGGTCTCTGCCCTTCACATCCTCATTCTCATCCTGCTTTTCATAGCC
ACTTTGGACAAGTCCTGGTGGACCCTCCCCGGGAAGGAGTCCCTGAATCTCTGGTACGAC
TGTACGTGGAACAGTGACAACAAAACGTGGGCCTGCAGTAATGTCAGCGAGAATGGCTGG
CTGAAGGCAGTGCAGGTCCTCATGGTACTTTCCCTCATCCTCTGCTGTCTGTCCTTCATC
CTGTTCATGTTCCAACTGTACACCATGCGGCGAGGAGGGCTCTTCTATGCCACTGGCCTC
TGCCAGCTCTGCACCAGCGTGGCGGTGTTTACCGGGGCACTGATCTACGCCATTCATGCC
GAGGAGATCCTGGCAGATCGCCCGTCAGGGGGCAGCTTCGGTTACTGCTTTGCCCTGGCC
TGGGTAGCCTTCCCGCTCGCCCTGGCCAGTGGCATCATCTATATCCACCTGCGGAAGCGG
GAGTGAGGGCCACGCGTCCCCTCGCTTCCTCAGCCCGCTCCTGGCCCCTCCGCCTTACCC
TGAAGCCGGCGCCCCGCTCCAGAAAATAAATAACATTTAACCGTTAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGATGTCTCATCTCAACCGCGGGAGGGAGCCCCAGAAGATGCCTGTCTGGGGGCAGTGG
CGCGAGGGTGGAAGGAGGGAGGAGAAGGGCGGGGCGCGGAGGCCCGAACGAGGGACCAGA
CGCCGACTCTGACTTTTTCCGCCGCTCTCGGCTTCAGGCATCTCAGCTGCCCCTGTGCCG
ACCTCTTGAAGTCACTATCTCCTGACGTCCCCACCCCAGACTTCCAACTCAGCCATGTCA
CTCCTCCTGCTGGTGGTCTCTGCCCTTCACATCCTCATTCTCATCCTGCTTTTCATAGCC
ACTTTGGACAAGTCCTGGTGGACCCTCCCCGGGAAGGAGTCCCTGAATCTCTGGTACGAC
TGTACGTGGAACAGTGACAACAAAACGTGGGCCTGCAGTAATGTCAGCGAGAATGGCTGG
CTGAAGGCAGTGCAGGTCCTCATGGTACTTTCCCTCATCCTCTGCTGTCTGTCCTTCATC
CTGTTCATGTTCCAACTGTACACCATGCGGCGAGGAGGGCTCTTCTATGCCACTGGCCTC
TGCCAGCTCTGCACCAGCGTGGCGGTGTTTACCGGGGCACTGATCTACGCCATTCATGCC
GAGGAGATCCTGGCAGATCGCCCGTCAGGGGGCAGCTTCGGTTACTGCTTTGCCCTGGCC
TGGGTAGCCTTCCCGCTCGCCCTGGCCAGTGGCATCATCTATATCCACCTGCGGAAGCGG
GAGTGAGGGCCACGCGTCCCCTCGCTTCCTCAGCCCGCTCCTGGCCCCTCCGCCTTACCC
TGAAGCCGGCGCCCCGCTCCAGAAAATAAATAACATTTAACCGTTAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q58DR6_BOVIN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q58DR6_BOVIN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               596-755, + strand, RNAz p=0.784388

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               596-755, + strand, RNAz p=0.784388

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_001425, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001425, +

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               150-312, gnl|bosTau2|chr18 (50455300-50455145)
               

               
               150-312, gnl|Hg17|chr19 (53521820-53521991)
               

               
               150-312, gnl|Mm7|chr7 (42096664-42096523)
               


               
               557-794, gnl|bosTau2|chr18 (50452492-50452255)
               

               
               557-794, gnl|Hg17|chr19 (53525370-53525592)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               150-312, gnl|bosTau2|chr18 (50455300-50455145)
               

               
               150-312, gnl|Hg17|chr19 (53521820-53521991)
               

               
               150-312, gnl|Mm7|chr7 (42096664-42096523)
               


               
               557-794, gnl|bosTau2|chr18 (50452492-50452255)
               

               
               557-794, gnl|Hg17|chr19 (53525370-53525592)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

Help | Less info


               
               jca (0.797721)
               

               
               nms (0.641574)
               

               
               nca (0.547495)
               

               
               ill (0.526778)
               

               
               mas (0.42061)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               cly (0.361925)
               

               
               eye (0.341006)
               

               
               nco (0.323468)
               

               
               eli (0.303628)
               

               
               cag (0.302389)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               fty (0.17584)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.797721)
               

               
               nms (0.641574)
               

               
               nca (0.547495)
               

               
               ill (0.526778)
               

               
               mas (0.42061)
               

               
               nlu (0.383362)
               

               
               nep (0.36785)
               

               
               cly (0.361925)
               

               
               eye (0.341006)
               

               
               nco (0.323468)
               

               
               eli (0.303628)
               

               
               cag (0.302389)
               

               
               pla (0.267344)
               

               
               nmm (0.265604)
               

               
               cov (0.264306)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               med (0.232504)
               

               
               fty (0.17584)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	150-312, gnl\|bosTau2\|chr18 (50455300-50455145)
	150-312, gnl\|Hg17\|chr19 (53521820-53521991)
	150-312, gnl\|Mm7\|chr7 (42096664-42096523)

	557-794, gnl\|bosTau2\|chr18 (50452492-50452255)
	557-794, gnl\|Hg17\|chr19 (53525370-53525592)

	jca (0.797721)
	nms (0.641574)
	nca (0.547495)
	ill (0.526778)
	mas (0.42061)
	nlu (0.383362)
	nep (0.36785)
	cly (0.361925)
	eye (0.341006)
	nco (0.323468)
	eli (0.303628)
	cag (0.302389)
	pla (0.267344)
	nmm (0.265604)
	cov (0.264306)
	ese (0.253004)
	eep (0.245128)
	med (0.232504)
	fty (0.17584)
	csp (0.161186)
	pty (0.142714)
	eru (0.120048)
	ecc (0.115035)
	jej (0.0989218)
	eje (0.0988338)