Non-Coding RNA Search

Ss1.1-Pig4-TMW8061D03.3

Sequence:


               
               AAGCCCTACGCCTGCAAGGAGTGTGGGCGATGCTTCAGGCAGAGGACCACCCTCGTCAAC
CACCAGAGGACACACTCCAAGGAGAAGCCCTATGTGTGTGGCGTGTGTGGGCACAGCTTC
AGCCAGAACTCCACTCTCATCTCACACCGGCGGACGCACACGGGCGAGAAGCCTTACGTG
TGCGGGGTGTGTGGACGCGGCTTCAGTCTGAAGTCACACCTCAACAGACACCAGAACATA
CACTCAGGGGATAAGCCCATCGTGTGTAAGGACTGCGGGCGAGGCTTCAGCCAGCAGTCA
AATCTCATCAGACACCAGAGGACACACTCAGGGGAAAAGCCCATGGTGTGTGAGGAGTGC
GGGCGAGGCTTCAGCCAGAAGTCAAACCTCATTGCGCACCAGAGGACACACTCAGGGGAA
AAGCCGTACGTGTGCAGGGAGTGTGGGCGAGGCTTCAGTCACCAGGCAGGCCTCATCAGG
CACAGGCGGAAGCACGCGAGGGAAAAGCCTTACACATGCAGGCAGTGTGGACTCGGCTTT
AGCAGCAAGTCAGCACTAATTACACACAAATGGGTCCACTCGGAAGCGAAGCCTTGTTTG
TGCAGGGAGTGTGGCCAAGGCTTTACCCAAAAGTCACACCTCGTCTTACATCGAAGGACA
CACCAGGGGAAGAAGCCTTATGTGTGCAAGACATGCGGCCAAGGCTTTAGCCAGAAGGCT
CACCTCAGCCGACACAGGAGGATGAAATCTGTCCACCACAAACCACCACTTCAGTCTGAC
TCTGAGGCCTGTTCAGGACAATCTTCTGACCCTTTTCACTCTCTTTGAGAGTGAAGATGG
GGTCAAGGACTCAATACTCAACATTTTTTTACACTTGACACATGAAATGGAGGAGAAAAA
TGCATTCCACATTTGACTTAGTTTACTTCCTCCACACTAAGTCTTGATGTTTGTGGCCTT
TTGTTCTAATAAACTTTGCTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCCCTACGCCTGCAAGGAGTGTGGGCGATGCTTCAGGCAGAGGACCACCCTCGTCAAC
CACCAGAGGACACACTCCAAGGAGAAGCCCTATGTGTGTGGCGTGTGTGGGCACAGCTTC
AGCCAGAACTCCACTCTCATCTCACACCGGCGGACGCACACGGGCGAGAAGCCTTACGTG
TGCGGGGTGTGTGGACGCGGCTTCAGTCTGAAGTCACACCTCAACAGACACCAGAACATA
CACTCAGGGGATAAGCCCATCGTGTGTAAGGACTGCGGGCGAGGCTTCAGCCAGCAGTCA
AATCTCATCAGACACCAGAGGACACACTCAGGGGAAAAGCCCATGGTGTGTGAGGAGTGC
GGGCGAGGCTTCAGCCAGAAGTCAAACCTCATTGCGCACCAGAGGACACACTCAGGGGAA
AAGCCGTACGTGTGCAGGGAGTGTGGGCGAGGCTTCAGTCACCAGGCAGGCCTCATCAGG
CACAGGCGGAAGCACGCGAGGGAAAAGCCTTACACATGCAGGCAGTGTGGACTCGGCTTT
AGCAGCAAGTCAGCACTAATTACACACAAATGGGTCCACTCGGAAGCGAAGCCTTGTTTG
TGCAGGGAGTGTGGCCAAGGCTTTACCCAAAAGTCACACCTCGTCTTACATCGAAGGACA
CACCAGGGGAAGAAGCCTTATGTGTGCAAGACATGCGGCCAAGGCTTTAGCCAGAAGGCT
CACCTCAGCCGACACAGGAGGATGAAATCTGTCCACCACAAACCACCACTTCAGTCTGAC
TCTGAGGCCTGTTCAGGACAATCTTCTGACCCTTTTCACTCTCTTTGAGAGTGAAGATGG
GGTCAAGGACTCAATACTCAACATTTTTTTACACTTGACACATGAAATGGAGGAGAAAAA
TGCATTCCACATTTGACTTAGTTTACTTCCTCCACACTAAGTCTTGATGTTTGTGGCCTT
TTGTTCTAATAAACTTTGCTTCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               PRDM9_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               PRDM9_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               597-715, - strand, RNAz p=0.795988

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               597-715, - strand, RNAz p=0.795988

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-715, gnl|bosTau2|chr10 (8996759-8996045)
               

               
               1-715, gnl|Hg17|chr19 (42818564-42817766)
               

               
               1-715, gnl|Mm7|chr2 (127310190-127309560)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-715, gnl|bosTau2|chr10 (8996759-8996045)
               

               
               1-715, gnl|Hg17|chr19 (42818564-42817766)
               

               
               1-715, gnl|Mm7|chr2 (127310190-127309560)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               ute (0.132784)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               ute (0.132784)

	1-715, gnl\|bosTau2\|chr10 (8996759-8996045)
	1-715, gnl\|Hg17\|chr19 (42818564-42817766)
	1-715, gnl\|Mm7\|chr2 (127310190-127309560)