Non-Coding RNA Search

Ss1.1-Pig4-TMW8061D05.5

Sequence:


               
               CAATTTCTAAAATGTTGTTATCCCTGGAAGGGAATGAGATAGAGTTTTTAACTATAAGAA
CCTACTAGTCTGTTTTTTGCCTTTGAAAAAACTAACCTTTGAGGTCTGTGACTTTCATCT
GAAGCAATTGTTCCATTAATCAAAAATGCCTCACAAGTCAATGAGCCAGGCCAGCACCCT
CCTACGTCTGAGGGTGCTGGGCTGGGTTTGTGCATCTTATTTCCTTAGAGAATATCTGTT
TTTATTATGACCTTAATTATAAATACCTATATATAGTAATAGGATTTTCTCTCACCCCAC
CCTCTTTTAATCATTATCACGTGAGTGTAAACCACACCTCCCCCCCACCCCACTTTACTG
AAAAAATGCACTTTAATTCCTAAGGAGAGTGGCTGTTCTGGCCCTGAAGCCAGATTACTT
CAGGAGGAGAATTGAGGAGGGAGAACTCTTGGCAGACCCTGTGAAATTTAACCAAATCCC
TTAATGTAAATACACAAATCAACCATTTTTAAGCTGCCCTTACCCCCTGCCAAGGGGAAA
AAGAAATAACCAAATTAAAAAGTTAAAAATGCCCACCCTGATTTTAGAAGTTTCACTGGA
GAAAATACCCAATCTTATTTTTTCAGCTACCAGCTTATAAAAAACTTCTTGGTGGTTTTG
TGAGAGTCTGAGATTTTTTTAAAATTAAAAAGTGAAGTGAATACCCACAGGCTATAGAAT
ATGATCCTGATTTGTTTCATTTCTAAGTATCAGATTGGTTCTCTCCTTCAATCTGACAGG
TGTTCTCAGTCTCTCCTCCTGTAGATTCTGTCCTTCCCCTGATGACAAGCCAATAGTTCT
TGGTGGGGTTGCATGTCTCCTAGAGCCCAAGGAGCCCTGTTGTGTCCGGGAAGGGGGGAG
GGCAGGAGGGTGGGCAGACTAGGGTTGGGGGAGGGAGATTTAGAGAAAGAGTGAAGATAA
GGGTTTATATAAACAAACATATTTAAAGCAGTTTAGCAAAAAGCTTTCTCGTTGAACAGC
TTTAAGAACAATGTGAATGAAATCTTAGCAACTTGGTTAGTAATCTGAAAAGTCTATTAA
TGTATACTTGAAATTTGTTTGTACAAAAATACCTTTTCCTCTTTATTTTAACACTGTGTA
AAAGAACATTATGCATGTGAGTGGTTTGAGAATTAAATGGTTTAATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATTTCTAAAATGTTGTTATCCCTGGAAGGGAATGAGATAGAGTTTTTAACTATAAGAA
CCTACTAGTCTGTTTTTTGCCTTTGAAAAAACTAACCTTTGAGGTCTGTGACTTTCATCT
GAAGCAATTGTTCCATTAATCAAAAATGCCTCACAAGTCAATGAGCCAGGCCAGCACCCT
CCTACGTCTGAGGGTGCTGGGCTGGGTTTGTGCATCTTATTTCCTTAGAGAATATCTGTT
TTTATTATGACCTTAATTATAAATACCTATATATAGTAATAGGATTTTCTCTCACCCCAC
CCTCTTTTAATCATTATCACGTGAGTGTAAACCACACCTCCCCCCCACCCCACTTTACTG
AAAAAATGCACTTTAATTCCTAAGGAGAGTGGCTGTTCTGGCCCTGAAGCCAGATTACTT
CAGGAGGAGAATTGAGGAGGGAGAACTCTTGGCAGACCCTGTGAAATTTAACCAAATCCC
TTAATGTAAATACACAAATCAACCATTTTTAAGCTGCCCTTACCCCCTGCCAAGGGGAAA
AAGAAATAACCAAATTAAAAAGTTAAAAATGCCCACCCTGATTTTAGAAGTTTCACTGGA
GAAAATACCCAATCTTATTTTTTCAGCTACCAGCTTATAAAAAACTTCTTGGTGGTTTTG
TGAGAGTCTGAGATTTTTTTAAAATTAAAAAGTGAAGTGAATACCCACAGGCTATAGAAT
ATGATCCTGATTTGTTTCATTTCTAAGTATCAGATTGGTTCTCTCCTTCAATCTGACAGG
TGTTCTCAGTCTCTCCTCCTGTAGATTCTGTCCTTCCCCTGATGACAAGCCAATAGTTCT
TGGTGGGGTTGCATGTCTCCTAGAGCCCAAGGAGCCCTGTTGTGTCCGGGAAGGGGGGAG
GGCAGGAGGGTGGGCAGACTAGGGTTGGGGGAGGGAGATTTAGAGAAAGAGTGAAGATAA
GGGTTTATATAAACAAACATATTTAAAGCAGTTTAGCAAAAAGCTTTCTCGTTGAACAGC
TTTAAGAACAATGTGAATGAAATCTTAGCAACTTGGTTAGTAATCTGAAAAGTCTATTAA
TGTATACTTGAAATTTGTTTGTACAAAAATACCTTTTCCTCTTTATTTTAACACTGTGTA
AAAGAACATTATGCATGTGAGTGGTTTGAGAATTAAATGGTTTAATAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               109-211, + strand, RNAz p=0.978806

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               109-211, + strand, RNAz p=0.978806

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               109-1188, gnl|bosTau2|chr21 (47575056-47576120)
               

               
               109-1188, gnl|Hg17|chr1 (170603003-170604339)
               

               
               109-1188, gnl|Mm7|chr1 (160966374-160964977)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-1188, gnl|bosTau2|chr21 (47575056-47576120)
               

               
               109-1188, gnl|Hg17|chr1 (170603003-170604339)
               

               
               109-1188, gnl|Mm7|chr1 (160966374-160964977)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cmu (0.372787)
               

               
               ecc (0.23007)
               

               
               cje (0.165235)
               

               
               che (0.136314)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.372787)
               

               
               ecc (0.23007)
               

               
               cje (0.165235)
               

               
               che (0.136314)

	109-1188, gnl\|bosTau2\|chr21 (47575056-47576120)
	109-1188, gnl\|Hg17\|chr1 (170603003-170604339)
	109-1188, gnl\|Mm7\|chr1 (160966374-160964977)