Non-Coding RNA Search

Ss1.1-Pig4-TMW8061D11.3

Sequence:


               
               TGGCCTCAGCCTTCTAGGGGCAGAAACCTTTCTCCCTGCGTTTGAGTGATGACACCCGTC
CTTGTGGAGGTGTTCTCTCCTGAGGCTGAGTGCAGCTGACCATGTTTCTAACTAAACCCT
CCCTACACTGCCTCGGTGCCCCTTCCTGTCCTGCAGAGGACTTGACACTTGGTTTCATAG
GACCTGCTCCTTTACTGGCTCTGACACTCGTTCTCTTCTCCTGTCCTCTCTAGGGTCCAA
CCACAGCAGACCCGGGCTCCCAGTGGAGGAGAGCCCCGGCCGGAACCCGGGCGTTTAACC
GCTTGCCAGGAGCCCCAGATCTGGGGAACAGATAAGCACGTGGGGAACTGGAGCGAGCCA
AGGAGTGGCCTCCTGCCAGCCCGTCCCCCGTCCCCTGCAGGCCACGTTTTAGATGGCCTT
CATGTGCGGGTCCCGGCTGTCCTCAGAACCAGACATCAGTGCCAGGAGCCTTCAGCAGGT
CCTGCCCCCCTTAAGGAGATGGGCTCAGCTGGGACCAGCTGTCCAGGTTGCTTCTGAACG
GAATGAAAGGAACAGCATCATCTCCAGTCCCCGGGGGCCAGCCTCCCTGTGACAGTGCAG
TGTATTATACCTCTTCTGGCCAAGCCACAGTGCACGATGACTGCCTTTATGTGGCTGTGA
CCTGTACTCTCTTTGCTTTTAATTTGCCAACCTTCTGCTGCTGGCAGCACTTTTTTGAGT
GAACCAAGAGCACCGGTGTGGGCTGGGGGGTTCACATCCACGGCCTGGGCTACAGGGACC
TTTTCAGCTTCTCTTATGGTGCCATGCTTCAGAGCATGCACTCAGCCTGTCCCATGTGCC
AAACCTAAAACAGGTCTGTCTCACCAGGCCCGCTGCCTCCTGTGGAGGTGGCTTTTTTGA
TCCCAGCCCCAGCCCTGAGTGAGCATGCTGGCCCTGGTGGGGCCGAGGAGCCTGCTCTTC
CTGCTGCTCCTCTGCCTGCCTGGAATTGCCACTAACAGTATTGTCATTTTCTGTGTTTAA
GAAGAGGTCACGTGTGAGAGGAAGGGATGGTTCTGCTGCACCTAATCCTTTCTTCGTTGT
TGGATCCCAGGGAGGGTAGCCATCAGCCCTGTTTCACACCTTCCCCCTGAGGCCCATGGG
TTGTGGGGGCGTGTGGCTGTCTAGTGCATGGACTGCAGAGAGGGAGGCAGGGTGGTTCCG
GGACCAGGTAGATCCCCATCACCTTTCTTAAAAAAACATGAAATCAGAGTTTCCTTATAT
CTCTGAAACATTTCAAGCCCCTTACTTTTTTTCTTTTTCTAGCTGAGGGGTTTTAGAGAA
GTGGGAACAAGAGGGCATTCATCTCGTCTTCTGGTTCACCTTCATTCACCTTGCACAGTT
CTTCAGTTGTGTAGAAACTGGGGCATCACAGGGACCTAGGTAGGATAGGGAGGGAGGAGG
ATTTCTGGAAACTTTCTCAAAGGATTTTGAGTTATTATCCAGGCTCAATGGGAACGAAGG
CCAAAAAACAGCATGCTCACTTTAGAAATTGTTCTCAAGGAATTCTCTCCAAGAGCAAAC
TCATCTGTCTCCAGAATAGTGGTTCCTAACTTTGGCTGCACATCGGAATCACATGGCAAA
TAAAAAAATGATCCCTGGGGCCCACCCCCTGGGGAGTGTGATTTTAATCCGCTGGGCGCC
AGGGTTTTATTTTTTAAAATAATTTTAGATTCATAGATCATATCCCCTTCACATCAGCTT
CCCTGAAGCTTCCCAGCTTCACATGACATAATCCTGATACTAAAAAATCAATGTTGGTAC
AGAACTATAAATTACACTTACTTGGATTTTTATCACTTTTTCCAGTAATGTCCCTTTTCT
GTTGCAGGATCCACTTGAGGGTACCATGTTGCATTTAGAGCTTTTGCTTTTTTTCCTCTA
ACTTTTTATTTTGAAATAATTACAGATTCATTAGGAAGTTGCAAGGACAGAGGTCTCATG
TGCCTGCCACCAGGTTTTCCTCAGTGGCCACATCTTACATAGGTACAGTGATGTCTCAGA
ACCAGAGATCTCCATGCTGGCTCAGTGTGGGTGTGTAGTTCTAGAGCAACTTAGCGCATG
TAGATTTGCGTAACCACCACTGCCCTCTACAGAACTGTTCCTCACCAGGATCCCCTCCAA
CAGACCCTTTTAGAGCCATACCCACCCCCTCTGGCCACCATCCCTAATCCCTGGCAACCA
CTAATCTGTTCATCATCTCTATAATTTTTGTCACTTCAAGAATGTTGTATAAATGGGATC
CCATAGTATGTAACCACTGGGACTGGCTTTTTTCCAGTGTAATGTTTCCTAAGTGTAATG
TTCTGGAGTCTCCTGCAGGCTGTGTGGGTGCCAGTCGTTCACCCCTTTCTGACTGCTGGG
TGCTGTTCCGTCATGGGCTCCTGTCCTGTCTAAGGACATCTGGGTGGTTCCCGGGTTTTG
GCTATTCCAAATAAAGCTGCTATGAACATCAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCCTCAGCCTTCTAGGGGCAGAAACCTTTCTCCCTGCGTTTGAGTGATGACACCCGTC
CTTGTGGAGGTGTTCTCTCCTGAGGCTGAGTGCAGCTGACCATGTTTCTAACTAAACCCT
CCCTACACTGCCTCGGTGCCCCTTCCTGTCCTGCAGAGGACTTGACACTTGGTTTCATAG
GACCTGCTCCTTTACTGGCTCTGACACTCGTTCTCTTCTCCTGTCCTCTCTAGGGTCCAA
CCACAGCAGACCCGGGCTCCCAGTGGAGGAGAGCCCCGGCCGGAACCCGGGCGTTTAACC
GCTTGCCAGGAGCCCCAGATCTGGGGAACAGATAAGCACGTGGGGAACTGGAGCGAGCCA
AGGAGTGGCCTCCTGCCAGCCCGTCCCCCGTCCCCTGCAGGCCACGTTTTAGATGGCCTT
CATGTGCGGGTCCCGGCTGTCCTCAGAACCAGACATCAGTGCCAGGAGCCTTCAGCAGGT
CCTGCCCCCCTTAAGGAGATGGGCTCAGCTGGGACCAGCTGTCCAGGTTGCTTCTGAACG
GAATGAAAGGAACAGCATCATCTCCAGTCCCCGGGGGCCAGCCTCCCTGTGACAGTGCAG
TGTATTATACCTCTTCTGGCCAAGCCACAGTGCACGATGACTGCCTTTATGTGGCTGTGA
CCTGTACTCTCTTTGCTTTTAATTTGCCAACCTTCTGCTGCTGGCAGCACTTTTTTGAGT
GAACCAAGAGCACCGGTGTGGGCTGGGGGGTTCACATCCACGGCCTGGGCTACAGGGACC
TTTTCAGCTTCTCTTATGGTGCCATGCTTCAGAGCATGCACTCAGCCTGTCCCATGTGCC
AAACCTAAAACAGGTCTGTCTCACCAGGCCCGCTGCCTCCTGTGGAGGTGGCTTTTTTGA
TCCCAGCCCCAGCCCTGAGTGAGCATGCTGGCCCTGGTGGGGCCGAGGAGCCTGCTCTTC
CTGCTGCTCCTCTGCCTGCCTGGAATTGCCACTAACAGTATTGTCATTTTCTGTGTTTAA
GAAGAGGTCACGTGTGAGAGGAAGGGATGGTTCTGCTGCACCTAATCCTTTCTTCGTTGT
TGGATCCCAGGGAGGGTAGCCATCAGCCCTGTTTCACACCTTCCCCCTGAGGCCCATGGG
TTGTGGGGGCGTGTGGCTGTCTAGTGCATGGACTGCAGAGAGGGAGGCAGGGTGGTTCCG
GGACCAGGTAGATCCCCATCACCTTTCTTAAAAAAACATGAAATCAGAGTTTCCTTATAT
CTCTGAAACATTTCAAGCCCCTTACTTTTTTTCTTTTTCTAGCTGAGGGGTTTTAGAGAA
GTGGGAACAAGAGGGCATTCATCTCGTCTTCTGGTTCACCTTCATTCACCTTGCACAGTT
CTTCAGTTGTGTAGAAACTGGGGCATCACAGGGACCTAGGTAGGATAGGGAGGGAGGAGG
ATTTCTGGAAACTTTCTCAAAGGATTTTGAGTTATTATCCAGGCTCAATGGGAACGAAGG
CCAAAAAACAGCATGCTCACTTTAGAAATTGTTCTCAAGGAATTCTCTCCAAGAGCAAAC
TCATCTGTCTCCAGAATAGTGGTTCCTAACTTTGGCTGCACATCGGAATCACATGGCAAA
TAAAAAAATGATCCCTGGGGCCCACCCCCTGGGGAGTGTGATTTTAATCCGCTGGGCGCC
AGGGTTTTATTTTTTAAAATAATTTTAGATTCATAGATCATATCCCCTTCACATCAGCTT
CCCTGAAGCTTCCCAGCTTCACATGACATAATCCTGATACTAAAAAATCAATGTTGGTAC
AGAACTATAAATTACACTTACTTGGATTTTTATCACTTTTTCCAGTAATGTCCCTTTTCT
GTTGCAGGATCCACTTGAGGGTACCATGTTGCATTTAGAGCTTTTGCTTTTTTTCCTCTA
ACTTTTTATTTTGAAATAATTACAGATTCATTAGGAAGTTGCAAGGACAGAGGTCTCATG
TGCCTGCCACCAGGTTTTCCTCAGTGGCCACATCTTACATAGGTACAGTGATGTCTCAGA
ACCAGAGATCTCCATGCTGGCTCAGTGTGGGTGTGTAGTTCTAGAGCAACTTAGCGCATG
TAGATTTGCGTAACCACCACTGCCCTCTACAGAACTGTTCCTCACCAGGATCCCCTCCAA
CAGACCCTTTTAGAGCCATACCCACCCCCTCTGGCCACCATCCCTAATCCCTGGCAACCA
CTAATCTGTTCATCATCTCTATAATTTTTGTCACTTCAAGAATGTTGTATAAATGGGATC
CCATAGTATGTAACCACTGGGACTGGCTTTTTTCCAGTGTAATGTTTCCTAAGTGTAATG
TTCTGGAGTCTCCTGCAGGCTGTGTGGGTGCCAGTCGTTCACCCCTTTCTGACTGCTGGG
TGCTGTTCCGTCATGGGCTCCTGTCCTGTCTAAGGACATCTGGGTGGTTCCCGGGTTTTG
GCTATTCCAAATAAAGCTGCTATGAACATCAAAAAA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               237-432, - strand, RNAz p=0.798081
               

               
               606-717, - strand, RNAz p=0.978852
               

               
               1241-1380, + strand, RNAz p=0.91967
               

               
               2275-2389, - strand, RNAz p=0.545123

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               237-432, - strand, RNAz p=0.798081
               

               
               606-717, - strand, RNAz p=0.978852
               

               
               1241-1380, + strand, RNAz p=0.91967
               

               
               2275-2389, - strand, RNAz p=0.545123

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC007199, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC007199, +

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               123-1068, gnl|bosTau2|chr11 (3471524-3470574)
               

               
               123-1068, gnl|Hg17|chr2 (96920056-96921013)
               

               
               123-1068, gnl|Mm7|chr1 (36766440-36767370)
               


               
               1151-1563, gnl|bosTau2|chr11 (3470528-3470114)
               

               
               1151-1563, gnl|canFam2|chr10 (48265071-48264531)
               

               
               1151-1563, gnl|dasNov1|scaffold_116902 (3658-4164)
               

               
               1151-1563, gnl|echTel1|scaffold_263192 (6241-6724)
               

               
               1151-1563, gnl|hg17|chr2 (96920866-96921403)
               

               
               1151-1563, gnl|Hg17|chr2 (96921095-96921485)
               

               
               1151-1563, gnl|mm7|chr1 (36767214-36767681)
               

               
               1151-1563, gnl|Mm7|chr1 (36767409-36767761)
               

               
               1151-1563, gnl|oryCun1|scaffold_196360 (7822-8317)
               

               
               1151-1563, gnl|panTro1|chr12 (99941487-99942026)
               

               
               1151-1563, gnl|rheMac2|chr13 (97256247-97256784)
               

               
               1151-1563, gnl|rn3|chr9 (35470257-35470706)
               


               
               1564-2489, gnl|bosTau2|chr11 (3470085-3469134)
               

               
               1564-2489, gnl|Mm7|chr1 (36767787-36768588)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               123-1068, gnl|bosTau2|chr11 (3471524-3470574)
               

               
               123-1068, gnl|Hg17|chr2 (96920056-96921013)
               

               
               123-1068, gnl|Mm7|chr1 (36766440-36767370)
               


               
               1151-1563, gnl|bosTau2|chr11 (3470528-3470114)
               

               
               1151-1563, gnl|canFam2|chr10 (48265071-48264531)
               

               
               1151-1563, gnl|dasNov1|scaffold_116902 (3658-4164)
               

               
               1151-1563, gnl|echTel1|scaffold_263192 (6241-6724)
               

               
               1151-1563, gnl|hg17|chr2 (96920866-96921403)
               

               
               1151-1563, gnl|Hg17|chr2 (96921095-96921485)
               

               
               1151-1563, gnl|mm7|chr1 (36767214-36767681)
               

               
               1151-1563, gnl|Mm7|chr1 (36767409-36767761)
               

               
               1151-1563, gnl|oryCun1|scaffold_196360 (7822-8317)
               

               
               1151-1563, gnl|panTro1|chr12 (99941487-99942026)
               

               
               1151-1563, gnl|rheMac2|chr13 (97256247-97256784)
               

               
               1151-1563, gnl|rn3|chr9 (35470257-35470706)
               


               
               1564-2489, gnl|bosTau2|chr11 (3470085-3469134)
               

               
               1564-2489, gnl|Mm7|chr1 (36767787-36768588)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               fli (0.202881)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fli (0.202881)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               liv (0.146284)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)

	237-432, - strand, RNAz p=0.798081
	606-717, - strand, RNAz p=0.978852
	1241-1380, + strand, RNAz p=0.91967
	2275-2389, - strand, RNAz p=0.545123

	123-1068, gnl\|bosTau2\|chr11 (3471524-3470574)
	123-1068, gnl\|Hg17\|chr2 (96920056-96921013)
	123-1068, gnl\|Mm7\|chr1 (36766440-36767370)

	1151-1563, gnl\|bosTau2\|chr11 (3470528-3470114)
	1151-1563, gnl\|canFam2\|chr10 (48265071-48264531)
	1151-1563, gnl\|dasNov1\|scaffold_116902 (3658-4164)
	1151-1563, gnl\|echTel1\|scaffold_263192 (6241-6724)
	1151-1563, gnl\|hg17\|chr2 (96920866-96921403)
	1151-1563, gnl\|Hg17\|chr2 (96921095-96921485)
	1151-1563, gnl\|mm7\|chr1 (36767214-36767681)
	1151-1563, gnl\|Mm7\|chr1 (36767409-36767761)
	1151-1563, gnl\|oryCun1\|scaffold_196360 (7822-8317)
	1151-1563, gnl\|panTro1\|chr12 (99941487-99942026)
	1151-1563, gnl\|rheMac2\|chr13 (97256247-97256784)
	1151-1563, gnl\|rn3\|chr9 (35470257-35470706)

	1564-2489, gnl\|bosTau2\|chr11 (3470085-3469134)
	1564-2489, gnl\|Mm7\|chr1 (36767787-36768588)

	fli (0.202881)
	fty (0.17584)
	nco (0.161734)
	cag (0.151194)
	liv (0.146284)
	cly (0.120642)
	ecc (0.115035)