Non-Coding RNA Search

Ss1.1-Pig4-TMW8061D12.3

Sequence:


               
               GTCTAATTGGAGCTGTAGCCACTGGCCTATGCCACAGCCACAGCAATGCGGGATCGGAGC
CACATCTGTGACCTACACCACAGCAACGCCGGATCCTTAACCCACATAGCAAGGCCAGGG
ATCGAACCCGCAACCTCATGGTTCCCAGTCGGATGCGTTAACCTCTGTGCCACAACGGGA
ACTCCCTAATAATCAATTTATTAATAAATTACATCCATCTCTGTTGCTTAATGACATTCA
AAATTATTAAGGTATTGCTAAAATGGAGAAGGAAATCTTTTCACTAAAAGATCTAGGTTT
AAGTTAAAGTCGTGATGATAATAAATGTTGGTATAAAAAACTAAGTTACTAGTATCACTG
TTTTAGGTATTGTAATATTTAACTCTTTATTTTAATTTCCTTCCTCGAATGGAAACAAAA
CCCCCTTAAATAATGGTACTTTCCAAGGGAAATCTAGTAAATACTTTGAAAAATTATTGA
TTTATTATTGGCGTGCCTAATTTTTAATCTCAATTTGCCAGAGTCAACTTTTTTTAATTA
AATATAAAATTAGTTTTCTGATGGTGGGGAAAAAATAAGCTTAACAACATATATCATCCC
TCCATGAGTTATTCCAGTTGTACCTGTTTGAATCCTGACAAATTAAGACATCTATGTCTC
AAACTAGGTCATCTCTTAGACTTCTGGAATTAAGATGGCATATATGTAATGACTTTAGAA
CTATATAAAAAGCCCAGATTGTTTTTCCTGAATTGCCCTTGGTGGATGGAAGCTTAAAAA
GTTAGTAGTATAACAGTATTCATAAATGGAGGCGAATTCCAAGGTCAAAGTATTTCATAA
AACTATTAAGAAATATTTCTAACTCCTTATATTATTTTAATAGCATAAGATTTATATATG
ACAGTATGATTCTAATTGATATACTCATGCGAGGCCTTCTTGTGAAACTTTATGGACCTG
GGAATGTTCACATTCCACAGCAGCTTACTGACCAAAATACCAGGCCATTGTGAGTTATGG
AGAAACTACCCCTAACTTTTTCTAATTATTTATTTTAAAAAGGTATTAATAAAATAAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTAATTGGAGCTGTAGCCACTGGCCTATGCCACAGCCACAGCAATGCGGGATCGGAGC
CACATCTGTGACCTACACCACAGCAACGCCGGATCCTTAACCCACATAGCAAGGCCAGGG
ATCGAACCCGCAACCTCATGGTTCCCAGTCGGATGCGTTAACCTCTGTGCCACAACGGGA
ACTCCCTAATAATCAATTTATTAATAAATTACATCCATCTCTGTTGCTTAATGACATTCA
AAATTATTAAGGTATTGCTAAAATGGAGAAGGAAATCTTTTCACTAAAAGATCTAGGTTT
AAGTTAAAGTCGTGATGATAATAAATGTTGGTATAAAAAACTAAGTTACTAGTATCACTG
TTTTAGGTATTGTAATATTTAACTCTTTATTTTAATTTCCTTCCTCGAATGGAAACAAAA
CCCCCTTAAATAATGGTACTTTCCAAGGGAAATCTAGTAAATACTTTGAAAAATTATTGA
TTTATTATTGGCGTGCCTAATTTTTAATCTCAATTTGCCAGAGTCAACTTTTTTTAATTA
AATATAAAATTAGTTTTCTGATGGTGGGGAAAAAATAAGCTTAACAACATATATCATCCC
TCCATGAGTTATTCCAGTTGTACCTGTTTGAATCCTGACAAATTAAGACATCTATGTCTC
AAACTAGGTCATCTCTTAGACTTCTGGAATTAAGATGGCATATATGTAATGACTTTAGAA
CTATATAAAAAGCCCAGATTGTTTTTCCTGAATTGCCCTTGGTGGATGGAAGCTTAAAAA
GTTAGTAGTATAACAGTATTCATAAATGGAGGCGAATTCCAAGGTCAAAGTATTTCATAA
AACTATTAAGAAATATTTCTAACTCCTTATATTATTTTAATAGCATAAGATTTATATATG
ACAGTATGATTCTAATTGATATACTCATGCGAGGCCTTCTTGTGAAACTTTATGGACCTG
GGAATGTTCACATTCCACAGCAGCTTACTGACCAAAATACCAGGCCATTGTGAGTTATGG
AGAAACTACCCCTAACTTTTTCTAATTATTTATTTTAAAAAGGTATTAATAAAATAAATT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               762-1080, gnl|bosTau2|chr16 (33597721-33598037)
               

               
               762-1080, gnl|Hg17|chr5 (114574250-114573934)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               762-1080, gnl|bosTau2|chr16 (33597721-33598037)
               

               
               762-1080, gnl|Hg17|chr5 (114574250-114573934)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               thg (0.380373)
               

               
               fco (0.314416)
               

               
               gul (0.177588)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ret (0.128733)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.380373)
               

               
               fco (0.314416)
               

               
               gul (0.177588)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               ret (0.128733)

	762-1080, gnl\|bosTau2\|chr16 (33597721-33598037)
	762-1080, gnl\|Hg17\|chr5 (114574250-114573934)

	thg (0.380373)
	fco (0.314416)
	gul (0.177588)
	liv (0.146284)
	lin (0.145603)
	ret (0.128733)