Non-Coding RNA Search

Ss1.1-Pig4-TMW8061D21.5

Sequence:


               
               AAAGACGCAGGCAGTTGTTGAGATAGGTATCACATCCACTGAAACAGTCAATTAGCAATT
TAGAGTTTCCAAGTATTTATGAGTGAGCCTCTGAAATTTTGACAGTTTTGTGCATGTGCA
TTCTTAATTAGAAAGTTAAATTTTGGGGAAAAATTTTTTTTCTTTAGTTCCAAAAGCCAT
GCTTAATTAAATTTGTAAGAAGTATATAATGAATACTTCCTAGACAAAAGGTTTCTTTCT
TTGCAGAGAACCTTGTTTTATTCATCAGTATACATGTAGTACCAAACATGGTGCCTATAA
AATAGAAGACAATCCAAAAATAAGCCTTGAAGGGATGGATATTTTGACGGTAGCAGTTCC
TAGTTGCTGCATAAAGTAATGAGCTCATCATTCTGTAGTTTCACTTCAGGTTTAGAAGTA
AAAATTATCTAGTCATCCTTTTTATATTTCATATCACCATTCTTTTTAACATTTCTCATT
TCCATGGCATTTCAACTACTGTACCTCCTGATATCATTTATAATTATGGGCATTTCCCTA
GTTTGTATATTTTTCAAAACACTGCATTACCATATTTGCTTTGATTTCTTTAAAGTCTCT
ATATAAAAGAAAAGAAGCGGTTTCAAAAGAGCTAATGTAACTAGATACTGTATGACACTT
TACTGAATTCAAAATTCAGATTTTAAAGATGTTCAGACTGATCTGGTTGAGCACAGGGAA
GCTGGGACCTGGCAGATACACTGCATTATGAAGATCAAACTATGTGTTTCTTCCCAAACT
CCTTATTTAACTCTGTCACTACTAGATTCTGTTCAGCCTTTAAATATTCCTTAATAGTCT
TTGTCTTCTCAAACTGAAAAAAGAAATTGCTCTGGGTCATAGATATTTTTAAAAGATTAA
TTTATTGCTTAGCCTTTGCACTTGGCAAGTGAACAGACCATGAAGTTTTGTTATAGGCTC
ATGTGAGCTGTATATTTGATGCAATGAAAAATGCTTCTACCAAGTTTTCAAGCCAGGGCG
TTATTTTATTGTGCACATCTAATACGTCAGATATATATGAACTAAGATTTGAGCATTATA
GTTACTGTATTTGTACTGTTGCTCACATGTATCTCATACTGTACTATTCTAAAACAGGTT
GTTTTTGCAGTTAAATTTATTGTAATTAAGAATAAATTTGAAATAAAAATATAATTGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAGACGCAGGCAGTTGTTGAGATAGGTATCACATCCACTGAAACAGTCAATTAGCAATT
TAGAGTTTCCAAGTATTTATGAGTGAGCCTCTGAAATTTTGACAGTTTTGTGCATGTGCA
TTCTTAATTAGAAAGTTAAATTTTGGGGAAAAATTTTTTTTCTTTAGTTCCAAAAGCCAT
GCTTAATTAAATTTGTAAGAAGTATATAATGAATACTTCCTAGACAAAAGGTTTCTTTCT
TTGCAGAGAACCTTGTTTTATTCATCAGTATACATGTAGTACCAAACATGGTGCCTATAA
AATAGAAGACAATCCAAAAATAAGCCTTGAAGGGATGGATATTTTGACGGTAGCAGTTCC
TAGTTGCTGCATAAAGTAATGAGCTCATCATTCTGTAGTTTCACTTCAGGTTTAGAAGTA
AAAATTATCTAGTCATCCTTTTTATATTTCATATCACCATTCTTTTTAACATTTCTCATT
TCCATGGCATTTCAACTACTGTACCTCCTGATATCATTTATAATTATGGGCATTTCCCTA
GTTTGTATATTTTTCAAAACACTGCATTACCATATTTGCTTTGATTTCTTTAAAGTCTCT
ATATAAAAGAAAAGAAGCGGTTTCAAAAGAGCTAATGTAACTAGATACTGTATGACACTT
TACTGAATTCAAAATTCAGATTTTAAAGATGTTCAGACTGATCTGGTTGAGCACAGGGAA
GCTGGGACCTGGCAGATACACTGCATTATGAAGATCAAACTATGTGTTTCTTCCCAAACT
CCTTATTTAACTCTGTCACTACTAGATTCTGTTCAGCCTTTAAATATTCCTTAATAGTCT
TTGTCTTCTCAAACTGAAAAAAGAAATTGCTCTGGGTCATAGATATTTTTAAAAGATTAA
TTTATTGCTTAGCCTTTGCACTTGGCAAGTGAACAGACCATGAAGTTTTGTTATAGGCTC
ATGTGAGCTGTATATTTGATGCAATGAAAAATGCTTCTACCAAGTTTTCAAGCCAGGGCG
TTATTTTATTGTGCACATCTAATACGTCAGATATATATGAACTAAGATTTGAGCATTATA
GTTACTGTATTTGTACTGTTGCTCACATGTATCTCATACTGTACTATTCTAAAACAGGTT
GTTTTTGCAGTTAAATTTATTGTAATTAAGAATAAATTTGAAATAAAAATATAATTGGTG

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-505, gnl|bosTau2|chr14 (49813891-49813399)
               

               
               1-505, gnl|Hg17|chr8 (82733918-82733441)
               

               
               1-505, gnl|Mm7|chr3 (10323172-10322745)
               


               
               733-998, gnl|bosTau2|chr14 (26131645-26131912)
               

               
               733-998, gnl|Hg17|chr8 (82733206-82732946)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-505, gnl|bosTau2|chr14 (49813891-49813399)
               

               
               1-505, gnl|Hg17|chr8 (82733918-82733441)
               

               
               1-505, gnl|Mm7|chr3 (10323172-10322745)
               


               
               733-998, gnl|bosTau2|chr14 (26131645-26131912)
               

               
               733-998, gnl|Hg17|chr8 (82733206-82732946)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

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               lin (0.728014)
               

               
               cbe (0.717703)
               

               
               isp (0.451128)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               fco (0.314416)
               

               
               lnt (0.284616)
               

               
               pla (0.267344)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.728014)
               

               
               cbe (0.717703)
               

               
               isp (0.451128)
               

               
               ret (0.3862)
               

               
               tra (0.369276)
               

               
               fco (0.314416)
               

               
               lnt (0.284616)
               

               
               pla (0.267344)
               

               
               kid (0.259471)
               

               
               mgp (0.230681)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               bla (0.124347)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	1-505, gnl\|bosTau2\|chr14 (49813891-49813399)
	1-505, gnl\|Hg17\|chr8 (82733918-82733441)
	1-505, gnl\|Mm7\|chr3 (10323172-10322745)

	733-998, gnl\|bosTau2\|chr14 (26131645-26131912)
	733-998, gnl\|Hg17\|chr8 (82733206-82732946)

	lin (0.728014)
	cbe (0.717703)
	isp (0.451128)
	ret (0.3862)
	tra (0.369276)
	fco (0.314416)
	lnt (0.284616)
	pla (0.267344)
	kid (0.259471)
	mgp (0.230681)
	fbs (0.175346)
	rec (0.17307)
	tbr (0.154178)
	spl (0.143184)
	hlv (0.139256)
	lyg (0.133103)
	nmm (0.132802)
	ova (0.129132)
	bla (0.124347)
	ebs (0.118301)
	spc (0.113366)