Non-Coding RNA Search

Ss1.1-Pig4-TMW8061D24.3

Sequence:


               
               CGGCCGCGGCGAAGGCACCTAGGCTGACACCCGTGCCGCGGGCCTACCTGGTCCCCGAGA
ACTTCCGGGAGAGGAACCTGCAGCTCATCCAGTCCATCAAGGACTTCCTACAGAGTGACG
AGGCCCGCTTCAGCAAGTTCAAGAGCCACTCGGGGGAGTTTAGACAGGGCGTGATCTCCG
CGGCCCAGTATTACAAGAGCTGCCGGGACCTGCTGGGGGAGAACTTCCAGAAGATCTTCA
ACGAGCTGCTGGTGCTCCTGCCAGACACGGCCAAGCAGCAGGAACTACTGTCTGCACACA
CGGACTTTCGGGGCCGGGAGAGGCCGCCAGGCGCCAAGGCCAAGAAGAGCAAGAAGGGTG
CGTGGCAAGCCAGCACCCAGCCGGCGGGCCTGGACTGCTGCGTGTGCCCCACCTGCCAGC
AGGTGCTTGCTCACGGTGACGTCAGCAGCCACCAGGCGCTGCACGCCGCCCGGGACGATG
ACTTCCCCTCCTTGCAAGCCATCGCCAGGATCCTCACGTAGCTCCGCCAGTGTGGGCAGG
AGCTGCCTTGCCCACGAGCCTCCTTGCTCCCTCCTCCTCCCCCGGGCTGCCAGGCAGCCA
GGTAAGGCCCCGGTGAGGCCACCTGCTCAGGTTCCTCAGCCAGCAGGCCCTCCAGGGGTC
CCCAGGGACGCCCACCTGCCCTGTCAGCACGCCATCATGTGGGAGTCCATCTGGTTTTCT
CCCGGGCATGGGCACGAGGCCCCTGCCTTGGCAGCAGGCTGGTCAGCATTTCTAGCTCAC
GCTTTGGGAAGGCGCTGGGCGGAAAAGACCAGGATGCCGAAGCCTGTCTGCACTATCAGA
GCCGGTGGCCACGATGGCCGCATCTGGGACCTCCGGAGCCTGAGGGCTGCCGCGCCACGG
CCCCTGAACCGTGGGTCCACTGGCACTAGAGTCAGGTGTTGAGTGTGTTGTGTAAACAGT
TGGCTGTTTCGTGATCCAAGAATGTTCAGGATTAAAAGCAGACACGAAATCGTGCTACTT
GAAGTTGAATCTTTTTATGAGACAAGCTGAATCTGGGATCTCAAATTGCCTCTCATCTTT
TATAAGACAGTTTATCTTCAAATAAATTTATTTTGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCCGCGGCGAAGGCACCTAGGCTGACACCCGTGCCGCGGGCCTACCTGGTCCCCGAGA
ACTTCCGGGAGAGGAACCTGCAGCTCATCCAGTCCATCAAGGACTTCCTACAGAGTGACG
AGGCCCGCTTCAGCAAGTTCAAGAGCCACTCGGGGGAGTTTAGACAGGGCGTGATCTCCG
CGGCCCAGTATTACAAGAGCTGCCGGGACCTGCTGGGGGAGAACTTCCAGAAGATCTTCA
ACGAGCTGCTGGTGCTCCTGCCAGACACGGCCAAGCAGCAGGAACTACTGTCTGCACACA
CGGACTTTCGGGGCCGGGAGAGGCCGCCAGGCGCCAAGGCCAAGAAGAGCAAGAAGGGTG
CGTGGCAAGCCAGCACCCAGCCGGCGGGCCTGGACTGCTGCGTGTGCCCCACCTGCCAGC
AGGTGCTTGCTCACGGTGACGTCAGCAGCCACCAGGCGCTGCACGCCGCCCGGGACGATG
ACTTCCCCTCCTTGCAAGCCATCGCCAGGATCCTCACGTAGCTCCGCCAGTGTGGGCAGG
AGCTGCCTTGCCCACGAGCCTCCTTGCTCCCTCCTCCTCCCCCGGGCTGCCAGGCAGCCA
GGTAAGGCCCCGGTGAGGCCACCTGCTCAGGTTCCTCAGCCAGCAGGCCCTCCAGGGGTC
CCCAGGGACGCCCACCTGCCCTGTCAGCACGCCATCATGTGGGAGTCCATCTGGTTTTCT
CCCGGGCATGGGCACGAGGCCCCTGCCTTGGCAGCAGGCTGGTCAGCATTTCTAGCTCAC
GCTTTGGGAAGGCGCTGGGCGGAAAAGACCAGGATGCCGAAGCCTGTCTGCACTATCAGA
GCCGGTGGCCACGATGGCCGCATCTGGGACCTCCGGAGCCTGAGGGCTGCCGCGCCACGG
CCCCTGAACCGTGGGTCCACTGGCACTAGAGTCAGGTGTTGAGTGTGTTGTGTAAACAGT
TGGCTGTTTCGTGATCCAAGAATGTTCAGGATTAAAAGCAGACACGAAATCGTGCTACTT
GAAGTTGAATCTTTTTATGAGACAAGCTGAATCTGGGATCTCAAATTGCCTCTCATCTTT
TATAAGACAGTTTATCTTCAAATAAATTTATTTTGC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               17-168, gnl|bosTau2|chr25 (3049567-3049718)
               

               
               17-168, gnl|Hg17|chr16 (1988854-1988703)
               

               
               17-168, gnl|Mm7|chr17 (22862466-22862617)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-168, gnl|bosTau2|chr25 (3049567-3049718)
               

               
               17-168, gnl|Hg17|chr16 (1988854-1988703)
               

               
               17-168, gnl|Mm7|chr17 (22862466-22862617)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

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               eli (0.151814)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)

	17-168, gnl\|bosTau2\|chr25 (3049567-3049718)
	17-168, gnl\|Hg17\|chr16 (1988854-1988703)
	17-168, gnl\|Mm7\|chr17 (22862466-22862617)

	eli (0.151814)
	pty (0.142714)
	pla (0.133672)
	ese (0.126502)
	pgl (0.118483)
	med (0.116252)
	ecc (0.115035)
	jej (0.0989218)