Non-Coding RNA Search

Ss1.1-Pig4-TMW8061E01.5

Sequence:


               
               AGGAAAGCCAGGAGGCATATTTTAAGGAAGAAAACCCAAGCTCCTTCTCAAACATAGCCC
CCCTACTTTGGGAAGTAAGTTAATCAGAGCAACAACTTCTTTGTTTATAAGTCTCGGTCC
TCCTTCTCAGCTTCTAGGGATTGTCTTTTGAAATGTTAATGGAGCCTGGATGGCTGGGAG
GGCAGTCCTCAACCCGAGGTCCCAATGGGACCCCGGTGTCCATTTGGGCCCACCAGAGTG
GGACAGGGAAGAAGCAGTCTCCCCCCACCCCCCAGCCACCTAGGGCGGGGAAGGAAATGA
GTTTCCATCTGGGAACGTGCTCTATCTAGAGAAACCTAGATGTAGAACAGCTCAGTGCCC
ATTTGCTTTTATTTGTTTCCAGTTTGTTCTCCCAAATATGAGCCAGAAGTGTTTGTTTTG
AGATTTTTTAAATGGTGTGTTGGGGTCGTGACTGGGGGGGAGTGAAGTGTTTGCTGAGGA
CATTGCTCCTCAGACTCCCATCTCACTTTGTCCATTGCAGCCTTTTGTTGGGAGATGACA
TTGTCAGTCAGCCCCTTGGTGTCTGTTCACACAAGATGCTTTTTAAATAGAATTGCCCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAAAGCCAGGAGGCATATTTTAAGGAAGAAAACCCAAGCTCCTTCTCAAACATAGCCC
CCCTACTTTGGGAAGTAAGTTAATCAGAGCAACAACTTCTTTGTTTATAAGTCTCGGTCC
TCCTTCTCAGCTTCTAGGGATTGTCTTTTGAAATGTTAATGGAGCCTGGATGGCTGGGAG
GGCAGTCCTCAACCCGAGGTCCCAATGGGACCCCGGTGTCCATTTGGGCCCACCAGAGTG
GGACAGGGAAGAAGCAGTCTCCCCCCACCCCCCAGCCACCTAGGGCGGGGAAGGAAATGA
GTTTCCATCTGGGAACGTGCTCTATCTAGAGAAACCTAGATGTAGAACAGCTCAGTGCCC
ATTTGCTTTTATTTGTTTCCAGTTTGTTCTCCCAAATATGAGCCAGAAGTGTTTGTTTTG
AGATTTTTTAAATGGTGTGTTGGGGTCGTGACTGGGGGGGAGTGAAGTGTTTGCTGAGGA
CATTGCTCCTCAGACTCCCATCTCACTTTGTCCATTGCAGCCTTTTGTTGGGAGATGACA
TTGTCAGTCAGCCCCTTGGTGTCTGTTCACACAAGATGCTTTTTAAATAGAATTGCCCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               155-313, - strand, RNAz p=0.997943

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               155-313, - strand, RNAz p=0.997943

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               3-600, gnl|bosTau2|chr2 (16967009-16966425)
               

               
               3-600, gnl|Hg17|chr2 (176845606-176846206)
               

               
               3-600, gnl|Mm7|chr2 (74574759-74575359)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-600, gnl|bosTau2|chr2 (16967009-16966425)
               

               
               3-600, gnl|Hg17|chr2 (176845606-176846206)
               

               
               3-600, gnl|Mm7|chr2 (74574759-74575359)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cut (0.169924)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)

	3-600, gnl\|bosTau2\|chr2 (16967009-16966425)
	3-600, gnl\|Hg17\|chr2 (176845606-176846206)
	3-600, gnl\|Mm7\|chr2 (74574759-74575359)