Ss1.1-Pig4-TMW8061E11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCCCTGAGGGACCAAGAAAGATTGTGCAATGAATGGTGATACTCGAGCTGCAGTGGTGAC CTCACCACCCCCAACCACAGCCCCTCACAAAGAGAGGTATTTCGACAGGGTGGATGAGAA CAATCCCGAGTACTTGCGGGAGAGGAACATGGCACCAGACCTTCGCCAGGACTTCAATAT GATGGAACAGAAGAAGAGAGTGTCCATGATTCTGCAAAGTCCCGCTTTCTGTGAAGAGTT GGAATCAATGATACAGGAACAGTTCAAAAAGGGGAAGAACCCCACAGGCCTGTTGGCGCT ACAGCAGATAGCGGATTTTATGACGACAAACGTGCCGAATGTGTACCCAGCAGCTCCGCA AGGAGGGATGGCTGCCTTGAACATGAGTCTTGGTATGGTGACTCCTGTGAATGACCTCAG AGGGTCTGATTCCATTGCCTATGACAAAGGGGAGAAGCTGCTGCGGTGTAAGCTGGCAGC GTTGTACCGACTGGCGGATCTGTTTGGGTGGTCTCACCTGATCTATAATCACATCACGAC CAGGGTGAGCTCCGAGCAGGAGCACTTCCTCATTGTTCCTTTTGGACTTCTCTACAGCGA AGTGACCGCGTCCAGCTTGGTCAAGATCAATCTACAAGGAGACGTGGTAGATCGCGGAAG TACTAACCTAGGAGTAAATCAAGCCGGCTTCACCTTACACTCTGCGGTCTATGCTGCTCG GCCGGATGTCAAGTGCGTCGTGCACATTCACACACCAGCAGGGGCTGCGGTCTCTGCCAT GAAATGTGGCCTCTTGCCCATCTCCCCAGAGGCGCTTTCCCTTGGAGAAGTGGCGTATCA TGATTATCACGGGGTTCTGATGAAGAGGAAGAAGAAAAGAAGGATGGTGACAAGAAGAAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCCCTGAGGGACCAAGAAAGATTGTGCAATGAATGGTGATACTCGAGCTGCAGTGGTGAC CTCACCACCCCCAACCACAGCCCCTCACAAAGAGAGGTATTTCGACAGGGTGGATGAGAA CAATCCCGAGTACTTGCGGGAGAGGAACATGGCACCAGACCTTCGCCAGGACTTCAATAT GATGGAACAGAAGAAGAGAGTGTCCATGATTCTGCAAAGTCCCGCTTTCTGTGAAGAGTT GGAATCAATGATACAGGAACAGTTCAAAAAGGGGAAGAACCCCACAGGCCTGTTGGCGCT ACAGCAGATAGCGGATTTTATGACGACAAACGTGCCGAATGTGTACCCAGCAGCTCCGCA AGGAGGGATGGCTGCCTTGAACATGAGTCTTGGTATGGTGACTCCTGTGAATGACCTCAG AGGGTCTGATTCCATTGCCTATGACAAAGGGGAGAAGCTGCTGCGGTGTAAGCTGGCAGC GTTGTACCGACTGGCGGATCTGTTTGGGTGGTCTCACCTGATCTATAATCACATCACGAC CAGGGTGAGCTCCGAGCAGGAGCACTTCCTCATTGTTCCTTTTGGACTTCTCTACAGCGA AGTGACCGCGTCCAGCTTGGTCAAGATCAATCTACAAGGAGACGTGGTAGATCGCGGAAG TACTAACCTAGGAGTAAATCAAGCCGGCTTCACCTTACACTCTGCGGTCTATGCTGCTCG GCCGGATGTCAAGTGCGTCGTGCACATTCACACACCAGCAGGGGCTGCGGTCTCTGCCAT GAAATGTGGCCTCTTGCCCATCTCCCCAGAGGCGCTTTCCCTTGGAGAAGTGGCGTATCA TGATTATCACGGGGTTCTGATGAAGAGGAAGAAGAAAAGAAGGATGGTGACAAGAAGAAG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | More info |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
| 53-222, gnl|bosTau2|chr26 (19633015-19632846) | |
| 53-222, gnl|canFam2|chr28 (24497178-24497386) | |
| 53-222, gnl|canFam2|chr3 (64218600-64218397) | |
| 53-222, gnl|danRer3|chr21 (40712-40508) | |
| 53-222, gnl|danRer3|chr22 (44932865-44932662) | |
| 53-222, gnl|dasNov1|scaffold_33781 (10703-10900) | |
| 53-222, gnl|dasNov1|scaffold_54998 (9463-9641) | |
| 53-222, gnl|echTel1|scaffold_315150 (5776-5979) | |
| 53-222, gnl|echTel1|scaffold_319887 (46717-46510) | |
| 53-222, gnl|fr1|chrUn (8721594-8721395) | |
| 53-222, gnl|fr1|chrUn (112135644-112135438) | |
| 53-222, gnl|galGal2|chr4 (82628180-82627974) | |
| 53-222, gnl|galGal2|chr6 (24847728-24847931) | |
| 53-222, gnl|hg17|chr10 (111850399-111850607) | |
| 53-222, gnl|Hg17|chr10 (111850426-111850595) | |
| 53-222, gnl|hg17|chr4 (2914647-2914853) | |
| 53-222, gnl|loxAfr1|scaffold_7782 (33465-33289) | |
| 53-222, gnl|loxAfr1|scaffold_7782 (33491-33285) | |
| 53-222, gnl|mm7|chr19 (53117452-53117658) | |
| 53-222, gnl|Mm7|chr19 (53117479-53117648) | |
| 53-222, gnl|mm7|chr5 (33663898-33664105) | |
| 53-222, gnl|monDom2|scaffold_10 (41361446-41361240) | |
| 53-222, gnl|monDom2|scaffold_14 (53294844-53294636) | |
| 53-222, gnl|oryCun1|scaffold_125199 (1815-1609) | |
| 53-222, gnl|oryCun1|scaffold_209089 (71866-72074) | |
| 53-222, gnl|panTro1|chr3 (2963995-2964201) | |
| 53-222, gnl|panTro1|chr8 (113759224-113759432) | |
| 53-222, gnl|rheMac2|chr1 (1074311-1074105) | |
| 53-222, gnl|rheMac2|chr9 (109787977-109788185) | |
| 53-222, gnl|rn3|chr1 (259589732-259589525) | |
| 53-222, gnl|rn3|chr14 (81784559-81784353) | |
| 53-222, gnl|tetNig1|chr18 (2340459-2340667) | |
| 53-222, gnl|tetNig1|chr4 (3264865-3265071) | |
| 53-222, gnl|xenTro1|scaffold_1065 (187062-187259) | |
| 53-222, gnl|xenTro1|scaffold_1065 (187056-187262) | |
| 224-388, gnl|bosTau2|chr6 (65308384-65308548) | |
| 224-388, gnl|canFam2|chr3 (64213602-64213489) | |
| 224-388, gnl|danRer3|chr21 (35785-35676) | |
| 224-388, gnl|dasNov1|scaffold_27177 (14933-15046) | |
| 224-388, gnl|echTel1|scaffold_319887 (44592-44479) | |
| 224-388, gnl|fr1|chrUn (112135019-112134906) | |
| 224-388, gnl|galGal2|chr4 (82626860-82626749) | |
| 224-388, gnl|hg17|chr4 (2920623-2920734) | |
| 224-388, gnl|Hg17|chr4 (2920631-2920795) | |
| 224-388, gnl|loxAfr1|scaffold_60122 (34348-34235) | |
| 224-388, gnl|mm7|chr5 (33667239-33667349) | |
| 224-388, gnl|Mm7|chr5 (33667246-33667410) | |
| 224-388, gnl|monDom2|scaffold_10 (41348398-41348285) | |
| 224-388, gnl|oryCun1|scaffold_125199 (320-207) | |
| 224-388, gnl|panTro1|chr3 (2969964-2970075) | |
| 224-388, gnl|rheMac2|chr1 (1067413-1067302) | |
| 224-388, gnl|rn3|chr14 (81781094-81780984) | |
| 224-388, gnl|tetNig1|chr4 (3265520-3265624) | |
| 224-388, gnl|xenTro1|scaffold_1065 (190277-190387) | |
| 619-771, gnl|bosTau2|chr6 (65324098-65324250) | |
| 619-771, gnl|canFam2|chr3 (64200960-64200801) | |
| 619-771, gnl|danRer3|chr21 (32672-32515) | |
| 619-771, gnl|dasNov1|scaffold_16696 (978-1137) | |
| 619-771, gnl|echTel1|scaffold_319887 (36606-36449) | |
| 619-771, gnl|fr1|chrUn (112134210-112134048) | |
| 619-771, gnl|galGal2|chr4 (82621063-82620906) | |
| 619-771, gnl|hg17|chr4 (2933313-2933472) | |
| 619-771, gnl|Hg17|chr4 (2933314-2933466) | |
| 619-771, gnl|loxAfr1|scaffold_52377 (6875-7032) | |
| 619-771, gnl|mm7|chr5 (33673044-33673203) | |
| 619-771, gnl|Mm7|chr5 (33673045-33673197) | |
| 619-771, gnl|monDom2|scaffold_10 (41325743-41325584) | |
| 619-771, gnl|oryCun1|scaffold_84672 (4139-3980) | |
| 619-771, gnl|panTro1|chr3 (2982714-2982873) | |
| 619-771, gnl|rheMac2|chr1 (1051743-1051584) | |
| 619-771, gnl|rn3|chr14 (81774550-81774391) | |
| 619-771, gnl|tetNig1|chr4 (3266332-3266487) | |
| 619-771, gnl|xenTro1|scaffold_1065 (193143-193301) |
| Aligned organism(s): 73 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 53-222, gnl|bosTau2|chr26 (19633015-19632846) | |
| 53-222, gnl|canFam2|chr28 (24497178-24497386) | |
| 53-222, gnl|canFam2|chr3 (64218600-64218397) | |
| 53-222, gnl|danRer3|chr21 (40712-40508) | |
| 53-222, gnl|danRer3|chr22 (44932865-44932662) | |
| 53-222, gnl|dasNov1|scaffold_33781 (10703-10900) | |
| 53-222, gnl|dasNov1|scaffold_54998 (9463-9641) | |
| 53-222, gnl|echTel1|scaffold_315150 (5776-5979) | |
| 53-222, gnl|echTel1|scaffold_319887 (46717-46510) | |
| 53-222, gnl|fr1|chrUn (8721594-8721395) | |
| 53-222, gnl|fr1|chrUn (112135644-112135438) | |
| 53-222, gnl|galGal2|chr4 (82628180-82627974) | |
| 53-222, gnl|galGal2|chr6 (24847728-24847931) | |
| 53-222, gnl|hg17|chr10 (111850399-111850607) | |
| 53-222, gnl|Hg17|chr10 (111850426-111850595) | |
| 53-222, gnl|hg17|chr4 (2914647-2914853) | |
| 53-222, gnl|loxAfr1|scaffold_7782 (33465-33289) | |
| 53-222, gnl|loxAfr1|scaffold_7782 (33491-33285) | |
| 53-222, gnl|mm7|chr19 (53117452-53117658) | |
| 53-222, gnl|Mm7|chr19 (53117479-53117648) | |
| 53-222, gnl|mm7|chr5 (33663898-33664105) | |
| 53-222, gnl|monDom2|scaffold_10 (41361446-41361240) | |
| 53-222, gnl|monDom2|scaffold_14 (53294844-53294636) | |
| 53-222, gnl|oryCun1|scaffold_125199 (1815-1609) | |
| 53-222, gnl|oryCun1|scaffold_209089 (71866-72074) | |
| 53-222, gnl|panTro1|chr3 (2963995-2964201) | |
| 53-222, gnl|panTro1|chr8 (113759224-113759432) | |
| 53-222, gnl|rheMac2|chr1 (1074311-1074105) | |
| 53-222, gnl|rheMac2|chr9 (109787977-109788185) | |
| 53-222, gnl|rn3|chr1 (259589732-259589525) | |
| 53-222, gnl|rn3|chr14 (81784559-81784353) | |
| 53-222, gnl|tetNig1|chr18 (2340459-2340667) | |
| 53-222, gnl|tetNig1|chr4 (3264865-3265071) | |
| 53-222, gnl|xenTro1|scaffold_1065 (187062-187259) | |
| 53-222, gnl|xenTro1|scaffold_1065 (187056-187262) | |
| 224-388, gnl|bosTau2|chr6 (65308384-65308548) | |
| 224-388, gnl|canFam2|chr3 (64213602-64213489) | |
| 224-388, gnl|danRer3|chr21 (35785-35676) | |
| 224-388, gnl|dasNov1|scaffold_27177 (14933-15046) | |
| 224-388, gnl|echTel1|scaffold_319887 (44592-44479) | |
| 224-388, gnl|fr1|chrUn (112135019-112134906) | |
| 224-388, gnl|galGal2|chr4 (82626860-82626749) | |
| 224-388, gnl|hg17|chr4 (2920623-2920734) | |
| 224-388, gnl|Hg17|chr4 (2920631-2920795) | |
| 224-388, gnl|loxAfr1|scaffold_60122 (34348-34235) | |
| 224-388, gnl|mm7|chr5 (33667239-33667349) | |
| 224-388, gnl|Mm7|chr5 (33667246-33667410) | |
| 224-388, gnl|monDom2|scaffold_10 (41348398-41348285) | |
| 224-388, gnl|oryCun1|scaffold_125199 (320-207) | |
| 224-388, gnl|panTro1|chr3 (2969964-2970075) | |
| 224-388, gnl|rheMac2|chr1 (1067413-1067302) | |
| 224-388, gnl|rn3|chr14 (81781094-81780984) | |
| 224-388, gnl|tetNig1|chr4 (3265520-3265624) | |
| 224-388, gnl|xenTro1|scaffold_1065 (190277-190387) | |
| 619-771, gnl|bosTau2|chr6 (65324098-65324250) | |
| 619-771, gnl|canFam2|chr3 (64200960-64200801) | |
| 619-771, gnl|danRer3|chr21 (32672-32515) | |
| 619-771, gnl|dasNov1|scaffold_16696 (978-1137) | |
| 619-771, gnl|echTel1|scaffold_319887 (36606-36449) | |
| 619-771, gnl|fr1|chrUn (112134210-112134048) | |
| 619-771, gnl|galGal2|chr4 (82621063-82620906) | |
| 619-771, gnl|hg17|chr4 (2933313-2933472) | |
| 619-771, gnl|Hg17|chr4 (2933314-2933466) | |
| 619-771, gnl|loxAfr1|scaffold_52377 (6875-7032) | |
| 619-771, gnl|mm7|chr5 (33673044-33673203) | |
| 619-771, gnl|Mm7|chr5 (33673045-33673197) | |
| 619-771, gnl|monDom2|scaffold_10 (41325743-41325584) | |
| 619-771, gnl|oryCun1|scaffold_84672 (4139-3980) | |
| 619-771, gnl|panTro1|chr3 (2982714-2982873) | |
| 619-771, gnl|rheMac2|chr1 (1051743-1051584) | |
| 619-771, gnl|rn3|chr14 (81774550-81774391) | |
| 619-771, gnl|tetNig1|chr4 (3266332-3266487) | |
| 619-771, gnl|xenTro1|scaffold_1065 (193143-193301) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |