Non-Coding RNA Search

Ss1.1-Pig4-TMW8061E14.3

Sequence:


               
               GGGGCCGGGTCGCGGGGGCAAGGGTATGAGGGAGGACTGCGGACGGCCACTCTTCCAGTT
CCCGCCATCCTCCGCGAGCTCAGGCCTCCGCGTCCGGGGCCTGGCAACCCCCTCGCCCCG
CCTCCGCGCGGTGGCTGCTGGGAGTTCGAGTCTCCTTTTCTGTAGTTGGGACGCTGTTCT
CGGTCTAGTGACCACAGCCTGGCTGGCGATGGACAACCCGCCTTAGGTAGAACGTGATTT
TTGCCCTTTACTTTAGCTGGACCCGGGGCCCTGACTGCTAAATGCATATTTAAGTGGTTT
TCTGTACGTTGTCCGTTCTAATGCTTCTAGTGGTTGAATCGTTTAAGCCTTTTCTACGTT
GTGGGTAAACTTATGTAAGATGTGATGAGGGAAACCCTTCCACGAATTGCTTTATAGTCT
AGTATACACGATAAGTTTTAATTAAAAGAACATGCAGATTTGGAATGTGATATATTTTCT
TCTTCAGGAACTTTACGCCTTTCCAAGAGGCCAGGTTTTTTTGTAAAGATTTTGTGGGAG
CTATGTAATGAGATGGAGAGTTTCATCAAATGACATCCTCTGACAATAAAACGTGTTTAA
ATTCTCTCAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGCCGGGTCGCGGGGGCAAGGGTATGAGGGAGGACTGCGGACGGCCACTCTTCCAGTT
CCCGCCATCCTCCGCGAGCTCAGGCCTCCGCGTCCGGGGCCTGGCAACCCCCTCGCCCCG
CCTCCGCGCGGTGGCTGCTGGGAGTTCGAGTCTCCTTTTCTGTAGTTGGGACGCTGTTCT
CGGTCTAGTGACCACAGCCTGGCTGGCGATGGACAACCCGCCTTAGGTAGAACGTGATTT
TTGCCCTTTACTTTAGCTGGACCCGGGGCCCTGACTGCTAAATGCATATTTAAGTGGTTT
TCTGTACGTTGTCCGTTCTAATGCTTCTAGTGGTTGAATCGTTTAAGCCTTTTCTACGTT
GTGGGTAAACTTATGTAAGATGTGATGAGGGAAACCCTTCCACGAATTGCTTTATAGTCT
AGTATACACGATAAGTTTTAATTAAAAGAACATGCAGATTTGGAATGTGATATATTTTCT
TCTTCAGGAACTTTACGCCTTTCCAAGAGGCCAGGTTTTTTTGTAAAGATTTTGTGGGAG
CTATGTAATGAGATGGAGAGTTTCATCAAATGACATCCTCTGACAATAAAACGTGTTTAA
ATTCTCTCAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               39-157, + strand, RNAz p=0.533189

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-157, + strand, RNAz p=0.533189

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC073832, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC073832, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-489, gnl|bosTau2|chr26 (13332048-13332535)
               

               
               1-489, gnl|Hg17|chr10 (102663021-102663534)
               

               
               1-489, gnl|Mm7|chr19 (44825347-44825779)
               


               
               499-607, gnl|bosTau2|chr26 (13332526-13332634)
               

               
               499-607, gnl|Hg17|chr10 (102663525-102663632)
               

               
               499-607, gnl|Mm7|chr19 (44825770-44825927)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-489, gnl|bosTau2|chr26 (13332048-13332535)
               

               
               1-489, gnl|Hg17|chr10 (102663021-102663534)
               

               
               1-489, gnl|Mm7|chr19 (44825347-44825779)
               


               
               499-607, gnl|bosTau2|chr26 (13332526-13332634)
               

               
               499-607, gnl|Hg17|chr10 (102663525-102663632)
               

               
               499-607, gnl|Mm7|chr19 (44825770-44825927)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pty (0.142714)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)

	1-489, gnl\|bosTau2\|chr26 (13332048-13332535)
	1-489, gnl\|Hg17\|chr10 (102663021-102663534)
	1-489, gnl\|Mm7\|chr19 (44825347-44825779)

	499-607, gnl\|bosTau2\|chr26 (13332526-13332634)
	499-607, gnl\|Hg17\|chr10 (102663525-102663632)
	499-607, gnl\|Mm7\|chr19 (44825770-44825927)