Ss1.1-Pig4-TMW8061E23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCTCTTCCTGATTGCAGGGAAAATTGTTGAGATGGAAGACATGGGAGTGATTGGGGGGC AGCTGGCCATGTACACAGTGACAGTCATCGTGGGCTTACTCATCCACGCCGTCATTGTCC TGCCCCTCCTCTACTTCTTGGTAACACGGAAAAACCCATGGGTTTTCATCGGAGGGTTGT TGCAAGCACTCGTCACAGCTCTAGGCACCTCCTCCAGCTCTGCCACCCTACCCATCACCT TCAAGTGCCTGGAAGAGAACAATGGTGTGGACAAACGTGTCACCAGATTCGTGCTCCCAG TGGGGGCCACCATTAACATGGATGGGACCGCCCTCTATGAGGCTTTGGCTGCCATTTTTA TTGCTCAAGTTAACAACTTCGAACTGAACTTTGGACAGATTATCACCATCAGCATCACAG CCACGGCGGCCAGTATCGGGGCAGCTGGGATCCCTCAGGCGGGCCTGGTCACTATGGTCA TCGTGCTGACATCCGTGGGCCTGCCCACTGACGACATCACGCTCATCATCGCGGTGGACT GGTTCCTGGATCGGCTTCGCACCACAACCAATGTCTTGGGAGACTCCCTGGGAGCCGGCA TTGTTGAACACTTGTCCCGACATGAACTGAAGAACCGGGATGTCGAAATGGGCAACTCAG TGATCGAAGAGAATGAAATGAAGAAACCATATCAGCTGATTGCCCAGGAAAGCGAAATCG AGAAACCCATCGACAGTGAAACCAAGATGTAGACGGACATAAAATGTTTCCTTGAGCACC CGGTGTTTGAAAACCGCTATGACATGTCTCCATCTCGTTACAACTCATTCTCTCCAGTAA GCCCCCTACCTCCCTTTTCCTCTCTACCCTGATAGGATTGGGAAGAATTCATCCCAAAAC AAGGGAGGATTTTGCAGTGGCCCAAATGTGTAGTTCTCATCCCACGTTTGAAATGTTTCC ATCATGTCATGCTAGTCTTATCTATTAAGGTCCTGCGATCAGAAATGGTCTTGGATCTTA AAAGTTGATGTGGCACACAATCCTGTAAATGTGATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCTCTTCCTGATTGCAGGGAAAATTGTTGAGATGGAAGACATGGGAGTGATTGGGGGGC AGCTGGCCATGTACACAGTGACAGTCATCGTGGGCTTACTCATCCACGCCGTCATTGTCC TGCCCCTCCTCTACTTCTTGGTAACACGGAAAAACCCATGGGTTTTCATCGGAGGGTTGT TGCAAGCACTCGTCACAGCTCTAGGCACCTCCTCCAGCTCTGCCACCCTACCCATCACCT TCAAGTGCCTGGAAGAGAACAATGGTGTGGACAAACGTGTCACCAGATTCGTGCTCCCAG TGGGGGCCACCATTAACATGGATGGGACCGCCCTCTATGAGGCTTTGGCTGCCATTTTTA TTGCTCAAGTTAACAACTTCGAACTGAACTTTGGACAGATTATCACCATCAGCATCACAG CCACGGCGGCCAGTATCGGGGCAGCTGGGATCCCTCAGGCGGGCCTGGTCACTATGGTCA TCGTGCTGACATCCGTGGGCCTGCCCACTGACGACATCACGCTCATCATCGCGGTGGACT GGTTCCTGGATCGGCTTCGCACCACAACCAATGTCTTGGGAGACTCCCTGGGAGCCGGCA TTGTTGAACACTTGTCCCGACATGAACTGAAGAACCGGGATGTCGAAATGGGCAACTCAG TGATCGAAGAGAATGAAATGAAGAAACCATATCAGCTGATTGCCCAGGAAAGCGAAATCG AGAAACCCATCGACAGTGAAACCAAGATGTAGACGGACATAAAATGTTTCCTTGAGCACC CGGTGTTTGAAAACCGCTATGACATGTCTCCATCTCGTTACAACTCATTCTCTCCAGTAA GCCCCCTACCTCCCTTTTCCTCTCTACCCTGATAGGATTGGGAAGAATTCATCCCAAAAC AAGGGAGGATTTTGCAGTGGCCCAAATGTGTAGTTCTCATCCCACGTTTGAAATGTTTCC ATCATGTCATGCTAGTCTTATCTATTAAGGTCCTGCGATCAGAAATGGTCTTGGATCTTA AAAGTTGATGTGGCACACAATCCTGTAAATGTGATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 781-939, - strand, RNAz p=0.755304 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 781-939, - strand, RNAz p=0.755304 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 209-412, gnl|bosTau2|chr7 (8807714-8807511) | |
| 209-412, gnl|canFam2|chr20 (50145196-50145029) | |
| 209-412, gnl|danRer3|chr11 (3537339-3537501) | |
| 209-412, gnl|dasNov1|scaffold_5333 (39628-39465) | |
| 209-412, gnl|echTel1|scaffold_295971 (146309-146147) | |
| 209-412, gnl|fr1|chrUn (301214740-301214902) | |
| 209-412, gnl|galGal2|chr28 (646140-646307) | |
| 209-412, gnl|hg17|chr19 (14925942-14926108) | |
| 209-412, gnl|Hg17|chr19 (14926150-14925947) | |
| 209-412, gnl|loxAfr1|scaffold_60495 (5777-5611) | |
| 209-412, gnl|mm7|chr10 (78456606-78456441) | |
| 209-412, gnl|Mm7|chr10 (78456396-78456600) | |
| 209-412, gnl|monDom2|scaffold_100 (490782-490948) | |
| 209-412, gnl|oryCun1|scaffold_174334 (16725-16891) | |
| 209-412, gnl|panTro1|chr1 (51510054-51510199) | |
| 209-412, gnl|rheMac2|chr19 (14533371-14533537) | |
| 209-412, gnl|rn3|chr7 (12398472-12398637) | |
| 209-412, gnl|tetNig1|chrUn_random (112293681-112293519) | |
| 209-412, gnl|xenTro1|scaffold_1301 (77265-77099) | |
| 210-410, gnl|bosTau2|chr18 (49685394-49685595) | |
| 210-410, gnl|Hg17|chr19 (51972512-51972310) | |
| 210-410, gnl|Mm7|chr7 (14559917-14560121) | |
| 214-409, gnl|bosTau2|chr11 (41638406-41638601) | |
| 214-409, gnl|Hg17|chr2 (65156846-65157047) | |
| 214-409, gnl|Mm7|chr11 (20260104-20259904) | |
| 548-1055, gnl|bosTau2|chr20 (24221908-24221394) | |
| 548-1055, gnl|Hg17|chr5 (36721924-36722435) | |
| 548-1055, gnl|Mm7|chr15 (8465828-8465337) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 209-412, gnl|bosTau2|chr7 (8807714-8807511) | |
| 209-412, gnl|canFam2|chr20 (50145196-50145029) | |
| 209-412, gnl|danRer3|chr11 (3537339-3537501) | |
| 209-412, gnl|dasNov1|scaffold_5333 (39628-39465) | |
| 209-412, gnl|echTel1|scaffold_295971 (146309-146147) | |
| 209-412, gnl|fr1|chrUn (301214740-301214902) | |
| 209-412, gnl|galGal2|chr28 (646140-646307) | |
| 209-412, gnl|hg17|chr19 (14925942-14926108) | |
| 209-412, gnl|Hg17|chr19 (14926150-14925947) | |
| 209-412, gnl|loxAfr1|scaffold_60495 (5777-5611) | |
| 209-412, gnl|mm7|chr10 (78456606-78456441) | |
| 209-412, gnl|Mm7|chr10 (78456396-78456600) | |
| 209-412, gnl|monDom2|scaffold_100 (490782-490948) | |
| 209-412, gnl|oryCun1|scaffold_174334 (16725-16891) | |
| 209-412, gnl|panTro1|chr1 (51510054-51510199) | |
| 209-412, gnl|rheMac2|chr19 (14533371-14533537) | |
| 209-412, gnl|rn3|chr7 (12398472-12398637) | |
| 209-412, gnl|tetNig1|chrUn_random (112293681-112293519) | |
| 209-412, gnl|xenTro1|scaffold_1301 (77265-77099) | |
| 210-410, gnl|bosTau2|chr18 (49685394-49685595) | |
| 210-410, gnl|Hg17|chr19 (51972512-51972310) | |
| 210-410, gnl|Mm7|chr7 (14559917-14560121) | |
| 214-409, gnl|bosTau2|chr11 (41638406-41638601) | |
| 214-409, gnl|Hg17|chr2 (65156846-65157047) | |
| 214-409, gnl|Mm7|chr11 (20260104-20259904) | |
| 548-1055, gnl|bosTau2|chr20 (24221908-24221394) | |
| 548-1055, gnl|Hg17|chr5 (36721924-36722435) | |
| 548-1055, gnl|Mm7|chr15 (8465828-8465337) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hyp (0.142837) | |
| che (0.136314) |