Non-Coding RNA Search

Ss1.1-Pig4-TMW8061F01.3

Sequence:


               
               AACATTTTGCACTGTATTTAATTTCAGATTGTTTTTAAAGTGACTTTGTGCCGCTTTGTG
AGGACAGATTTATTTTGGATATACCATTATAAGAGGAATTTTATATGTGTCTTATGCTAA
TGACCTTCCAAAATTTTATTTTCATAATTACTTCTTTGGCTTTGAATTTTTTTTTTTTTA
AAGCCCAACTGTAAGCTAGTTAGCTAATTGGGTATAAATTTTTGGGGTCACCTAAGTGTT
TTATGTCAGAGAGAAGTAGTAGTTTTCCTTTCAGAGACCCACTGAATAATATTTCTCAAG
TAGGAAATCCTTCTTTTAGAAATGTGGACACATAGCTTTTAGTATTATTGTAGTTTACAG
AATTAGGGCAGATTCTTGACTGCCGGTTTTCTCAGTTTCTTACTTAGGCTTGAATTTCCA
TAGACAATTGTAGCTGTTCACATGCCTTTTGAAAGGAATGTAACTGAAGATTGAGTGTAT
GACTAAACTTGGTGTCTGTTCTGAAATAATAATGAAGATTACACAATACCCATCAAATCT
GATTTAAAAGACTAAATAGAAAGGTTTATAGGTAAGGTTATTGATTGGCAGTGGGGCTGG
AAGAAGAGTTGTGGGAGAAATAGTGTGCATTTCAATTTTGTAATGCATAGATAAATTTGG
GGAAATTGGATGTATTATGCAACTGTGATTTGAGTTGTATAATATGTTAAATCCATTTGT
TGAGCTTCCATCAACTTTTATAAAATTCATTCTGATCTTTTACTGTTGCATGGTTGGAAA
TGTTTAAAATATTGCAAAATGTTAATTTAGAGTCATGTAATGGTTTTTGTAACCAGTTTT
CTTCTGTCTGCATGTAACTTGGATTTTTCAAATACACTCAGTGACTTATCAGTAACATCA
GTTTTCTTTTTATTCAACTTTTCAGTCTATGGAAATGTGATACCTACTCAATAGCTCAAC
TGTAACCAGCTATTTTTGTAATTTTGTAATATTTATCTACTAAGTTAGAGAAGTAGCCTC
ATAATATGCAGTCGATTATGTGTGTGTAGTGTGTGTATGTGTGTGTGGCCAGTCTCATCA
CTATATATGTAATTTGATGGTTTTAAAAACTAACTTTTCTAGAGCAATAAAGTAACTGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACATTTTGCACTGTATTTAATTTCAGATTGTTTTTAAAGTGACTTTGTGCCGCTTTGTG
AGGACAGATTTATTTTGGATATACCATTATAAGAGGAATTTTATATGTGTCTTATGCTAA
TGACCTTCCAAAATTTTATTTTCATAATTACTTCTTTGGCTTTGAATTTTTTTTTTTTTA
AAGCCCAACTGTAAGCTAGTTAGCTAATTGGGTATAAATTTTTGGGGTCACCTAAGTGTT
TTATGTCAGAGAGAAGTAGTAGTTTTCCTTTCAGAGACCCACTGAATAATATTTCTCAAG
TAGGAAATCCTTCTTTTAGAAATGTGGACACATAGCTTTTAGTATTATTGTAGTTTACAG
AATTAGGGCAGATTCTTGACTGCCGGTTTTCTCAGTTTCTTACTTAGGCTTGAATTTCCA
TAGACAATTGTAGCTGTTCACATGCCTTTTGAAAGGAATGTAACTGAAGATTGAGTGTAT
GACTAAACTTGGTGTCTGTTCTGAAATAATAATGAAGATTACACAATACCCATCAAATCT
GATTTAAAAGACTAAATAGAAAGGTTTATAGGTAAGGTTATTGATTGGCAGTGGGGCTGG
AAGAAGAGTTGTGGGAGAAATAGTGTGCATTTCAATTTTGTAATGCATAGATAAATTTGG
GGAAATTGGATGTATTATGCAACTGTGATTTGAGTTGTATAATATGTTAAATCCATTTGT
TGAGCTTCCATCAACTTTTATAAAATTCATTCTGATCTTTTACTGTTGCATGGTTGGAAA
TGTTTAAAATATTGCAAAATGTTAATTTAGAGTCATGTAATGGTTTTTGTAACCAGTTTT
CTTCTGTCTGCATGTAACTTGGATTTTTCAAATACACTCAGTGACTTATCAGTAACATCA
GTTTTCTTTTTATTCAACTTTTCAGTCTATGGAAATGTGATACCTACTCAATAGCTCAAC
TGTAACCAGCTATTTTTGTAATTTTGTAATATTTATCTACTAAGTTAGAGAAGTAGCCTC
ATAATATGCAGTCGATTATGTGTGTGTAGTGTGTGTATGTGTGTGTGGCCAGTCTCATCA
CTATATATGTAATTTGATGGTTTTAAAAACTAACTTTTCTAGAGCAATAAAGTAACTGTA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               611-729, - strand, RNAz p=0.938372

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               611-729, - strand, RNAz p=0.938372

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               95-1037, gnl|bosTau2|chr6 (32949898-32950811)
               

               
               95-1037, gnl|Hg17|chr4 (41797672-41798659)
               

               
               95-1037, gnl|Mm7|chr5 (66642248-66643194)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-1037, gnl|bosTau2|chr6 (32949898-32950811)
               

               
               95-1037, gnl|Hg17|chr4 (41797672-41798659)
               

               
               95-1037, gnl|Mm7|chr5 (66642248-66643194)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               kid (0.389206)
               

               
               mga (0.32041)
               

               
               lin (0.291206)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.389206)
               

               
               mga (0.32041)
               

               
               lin (0.291206)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               tra (0.123092)
               

               
               cbl (0.114797)

	95-1037, gnl\|bosTau2\|chr6 (32949898-32950811)
	95-1037, gnl\|Hg17\|chr4 (41797672-41798659)
	95-1037, gnl\|Mm7\|chr5 (66642248-66643194)

	kid (0.389206)
	mga (0.32041)
	lin (0.291206)
	fco (0.157208)
	lun (0.150489)
	fat (0.147427)
	ski (0.146735)
	liv (0.146284)
	ova (0.129132)
	ese (0.126502)
	tra (0.123092)
	cbl (0.114797)