Non-Coding RNA Search

Ss1.1-Pig4-TMW8061F03.3

Sequence:


               
               CGCGCCAGGCTCCCGCTTGCTGCCGGGCTCGCGCCGCAGAGGCCGGTGAGGCGCCTGCGG
CCACGCGGTGGAGGGTGCAGGCCGACGGTGCCGGTCGTCGGGGCGCGCGCGCGCACGCAT
GGAGGCGGCGCGGGCGGCTGCCTAAGGGCAGTGGGGCCAGTGGAGCGGCTACCTTGCGTA
TCCGTCGAGCGGCCTCGAGCCCACGGCAGCCGGCGGCGGCGGGCCGCGGAGCCGGCGCGG
CCATGGCGACGGGCACTCAACAGAAGGAGAACACGTTGCTTCACCTCTTCGCCGGCGGGT
GCGGGGGCACGGTTGGTGCTATTTTCACTTGTCCGCTGGAAGTCATTAAGACCAGATTGC
AGTCTTCAAGGTTAGCTCTTCGGACAGTCTATTATCCTCAGGTTCATCTGGGGACCATCA
GTGGAGCTGGAGTGGTGAGACCAACGTCAGTGACACCTGGACTCTTACAGGTTCTGAAGT
CAATCTTGGAGAAAGAGGGACCAAAGTCACTTTTTAGAGGCTTGGGTCCAAATTTGGTTG
GAGTTGCACCGTCAAGGGCTGTGTACTTTGCATGCTACTCCAAAGCCAAAGAGCAGTTCA
ATGGCATTTTCGTGCCCAATAGCAACATCGTGCACATTTTCTCCGCTGGCTCTGCAGCTT
TTGTCACAAATTCCTTAATGAATCCTATATGGATGGTTAAAACCCGGATGCAGCTAGAAC
GGAAGGTCCGAGGCTCCAAGCAGAGGAACACGCTCCAGTGCGCCCGCTACGTGTACCAGA
CGGAAGGCATCCGGGGCTTCTACCGGGGGTTAACGGCCTCCTATGCTGGAATTTCAGAAA
CGATCATCTGTTTCGCTATTTACGAAAGCTTAAAGAAGTATCTGAAGGAAGCGCCATTAG
CTGCTTCTACAAATGGGACTGAGAAAAATTCCACCAATTTTTTTGGACTTATGGCAGCTG
CGGCTCTTTCTAAGGGATGCGCCTCGTGTGTCGCGTACCCACACGAAGTCATAAGGACAC
GGCTCCGGGAGGAGGGCACCAAGTACAAGTCCTTCGTCCAGACCGCTCGGCTGGTCTTCC
GGGAAGAAGGCTACCTCGCCTTCTACAGAGGACTCTTTGCCCAGCTCATCCGGCAGATCC
CAAACACCGCTATTGTGTTGTCTACCTACGAGTTGATTGTGTACCTGTTAGAAGACCACG
TTCAGTAGCAGGCCAGAAAATTGTGCTCTAGAAGAATAAAACTGAAAAACTCTTGAGAAT
TTTTTTTTCCTCTGTTGCTGTTTAGAATGTTTGAGACCGAAGCAGGAAAGGCCGTCGAGT
GTCTGACTCCTTATCACCTGTTGGACATTCCTTTTGGACTCGTGCGTTCTGGAAGGTTTC
GATGCGTTAACGTTAACAGTTAATTATAACTCTTGGTTTGTTTCTCTTTTTTTAACTTAA
GAGGATTCAGGATTAAGCAGCCAGTAAATTAAATCATGCTATTTAATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCGCCAGGCTCCCGCTTGCTGCCGGGCTCGCGCCGCAGAGGCCGGTGAGGCGCCTGCGG
CCACGCGGTGGAGGGTGCAGGCCGACGGTGCCGGTCGTCGGGGCGCGCGCGCGCACGCAT
GGAGGCGGCGCGGGCGGCTGCCTAAGGGCAGTGGGGCCAGTGGAGCGGCTACCTTGCGTA
TCCGTCGAGCGGCCTCGAGCCCACGGCAGCCGGCGGCGGCGGGCCGCGGAGCCGGCGCGG
CCATGGCGACGGGCACTCAACAGAAGGAGAACACGTTGCTTCACCTCTTCGCCGGCGGGT
GCGGGGGCACGGTTGGTGCTATTTTCACTTGTCCGCTGGAAGTCATTAAGACCAGATTGC
AGTCTTCAAGGTTAGCTCTTCGGACAGTCTATTATCCTCAGGTTCATCTGGGGACCATCA
GTGGAGCTGGAGTGGTGAGACCAACGTCAGTGACACCTGGACTCTTACAGGTTCTGAAGT
CAATCTTGGAGAAAGAGGGACCAAAGTCACTTTTTAGAGGCTTGGGTCCAAATTTGGTTG
GAGTTGCACCGTCAAGGGCTGTGTACTTTGCATGCTACTCCAAAGCCAAAGAGCAGTTCA
ATGGCATTTTCGTGCCCAATAGCAACATCGTGCACATTTTCTCCGCTGGCTCTGCAGCTT
TTGTCACAAATTCCTTAATGAATCCTATATGGATGGTTAAAACCCGGATGCAGCTAGAAC
GGAAGGTCCGAGGCTCCAAGCAGAGGAACACGCTCCAGTGCGCCCGCTACGTGTACCAGA
CGGAAGGCATCCGGGGCTTCTACCGGGGGTTAACGGCCTCCTATGCTGGAATTTCAGAAA
CGATCATCTGTTTCGCTATTTACGAAAGCTTAAAGAAGTATCTGAAGGAAGCGCCATTAG
CTGCTTCTACAAATGGGACTGAGAAAAATTCCACCAATTTTTTTGGACTTATGGCAGCTG
CGGCTCTTTCTAAGGGATGCGCCTCGTGTGTCGCGTACCCACACGAAGTCATAAGGACAC
GGCTCCGGGAGGAGGGCACCAAGTACAAGTCCTTCGTCCAGACCGCTCGGCTGGTCTTCC
GGGAAGAAGGCTACCTCGCCTTCTACAGAGGACTCTTTGCCCAGCTCATCCGGCAGATCC
CAAACACCGCTATTGTGTTGTCTACCTACGAGTTGATTGTGTACCTGTTAGAAGACCACG
TTCAGTAGCAGGCCAGAAAATTGTGCTCTAGAAGAATAAAACTGAAAAACTCTTGAGAAT
TTTTTTTTCCTCTGTTGCTGTTTAGAATGTTTGAGACCGAAGCAGGAAAGGCCGTCGAGT
GTCTGACTCCTTATCACCTGTTGGACATTCCTTTTGGACTCGTGCGTTCTGGAAGGTTTC
GATGCGTTAACGTTAACAGTTAATTATAACTCTTGGTTTGTTTCTCTTTTTTTAACTTAA
GAGGATTCAGGATTAAGCAGCCAGTAAATTAAATCATGCTATTTAATT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|55962897|emb|CAI17318.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55962897|emb|CAI17318.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-301, gnl|bosTau2|chr16 (30732849-30733143)
               

               
               1-301, gnl|Hg17|chr1 (9533777-9534075)
               

               
               1-301, gnl|Mm7|chr4 (148763804-148763539)
               


               
               544-657, gnl|bosTau2|chr16 (30755279-30755391)
               

               
               544-657, gnl|Hg17|chr1 (9564570-9564682)
               

               
               544-657, gnl|Mm7|chr4 (148743453-148743341)
               


               
               988-1481, gnl|bosTau2|chr16 (30762520-30763015)
               

               
               988-1481, gnl|Hg17|chr1 (9576605-9577227)
               

               
               988-1481, gnl|Mm7|chr4 (148734493-148734075)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-301, gnl|bosTau2|chr16 (30732849-30733143)
               

               
               1-301, gnl|Hg17|chr1 (9533777-9534075)
               

               
               1-301, gnl|Mm7|chr4 (148763804-148763539)
               


               
               544-657, gnl|bosTau2|chr16 (30755279-30755391)
               

               
               544-657, gnl|Hg17|chr1 (9564570-9564682)
               

               
               544-657, gnl|Mm7|chr4 (148743453-148743341)
               


               
               988-1481, gnl|bosTau2|chr16 (30762520-30763015)
               

               
               988-1481, gnl|Hg17|chr1 (9576605-9577227)
               

               
               988-1481, gnl|Mm7|chr4 (148734493-148734075)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               mgm (0.360685)
               

               
               med (0.232504)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mgm (0.360685)
               

               
               med (0.232504)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               eli (0.151814)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	1-301, gnl\|bosTau2\|chr16 (30732849-30733143)
	1-301, gnl\|Hg17\|chr1 (9533777-9534075)
	1-301, gnl\|Mm7\|chr4 (148763804-148763539)

	544-657, gnl\|bosTau2\|chr16 (30755279-30755391)
	544-657, gnl\|Hg17\|chr1 (9564570-9564682)
	544-657, gnl\|Mm7\|chr4 (148743453-148743341)

	988-1481, gnl\|bosTau2\|chr16 (30762520-30763015)
	988-1481, gnl\|Hg17\|chr1 (9576605-9577227)
	988-1481, gnl\|Mm7\|chr4 (148734493-148734075)

	mgm (0.360685)
	med (0.232504)
	fcc (0.197785)
	eye (0.170503)
	eli (0.151814)
	pty (0.142714)
	pla (0.133672)
	ecc (0.115035)
	spc (0.113366)
	ldo (0.0970026)