Non-Coding RNA Search

Ss1.1-Pig4-TMW8061F16.3

Sequence:


               
               GGCTGTGCCCTCACCCGCCAGCGGGTGGGCGGGGGCCGAGGCCGGCATGGCGGCGCCGCG
TTCCTACGCGGAGGGCCCCTGCTGCTCCCACCCCAGCGCAGCGCCCAGCGTGCAGCAGAC
GCTGGACGAGATGGACTTCGAAAGGGGAATCTGGTCGGCAGCCCTGAACGGGGACCTGGG
CCGAGTGAAGTATTTAATCCAGAAGGCGGCAGACCCCAGTCAGCCTGACTCTGCTGGCTA
CACTGCTCTGCACTATGCCAGCCGCAATGGGCACTATGCTGTGTGCCAGTTCCTGCTGGA
AAGCGGAGCCAAGTGTGATGCCCAGACCCGTGGTGGGGCCACCGCCCTGCACCGGGCCAG
CTACTGTGGCCACACGGACATCGCCCGGCTCCTGCTTTCGCACGGCTGCAACCCCCAGCT
GGTGGACGCCGATGGCATGACCAGTCTGCATAAGGCTGCTGAGCAGGGGCACGTGGACAT
CTGCTCCCTCCTGCTGCAGCACAGCCCAGCCCTGAAGGCTATCCGGGACCGAAAGGCACG
GCTGGCTTGCGACCTACTGCCCCACAACAGTGACCTGCGGGACCTGCTGGCCGGCTGAGT
GGCCCCCTCCTGTCTCAGGCTGCGTGCAGACGGCACAGACTAGCTCTCCAGGCCCCCTCT
CAGTCACTGCAGGGTGGGAAGCTGAGGCCAGGAGGCCCAGGGAGAGCCCCATCCTGGCCG
CTGTGGAATCGGGGGGAGCAGCTGCACGGGGCTGCAGGGCCCCAGCCTGGACAGACGACC
TCACATTAAATGAGGTCACGTGGAAACGCCTACCCAGTGGGAAAAAATAAAGTTATATCC
TTACCTCGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGTGCCCTCACCCGCCAGCGGGTGGGCGGGGGCCGAGGCCGGCATGGCGGCGCCGCG
TTCCTACGCGGAGGGCCCCTGCTGCTCCCACCCCAGCGCAGCGCCCAGCGTGCAGCAGAC
GCTGGACGAGATGGACTTCGAAAGGGGAATCTGGTCGGCAGCCCTGAACGGGGACCTGGG
CCGAGTGAAGTATTTAATCCAGAAGGCGGCAGACCCCAGTCAGCCTGACTCTGCTGGCTA
CACTGCTCTGCACTATGCCAGCCGCAATGGGCACTATGCTGTGTGCCAGTTCCTGCTGGA
AAGCGGAGCCAAGTGTGATGCCCAGACCCGTGGTGGGGCCACCGCCCTGCACCGGGCCAG
CTACTGTGGCCACACGGACATCGCCCGGCTCCTGCTTTCGCACGGCTGCAACCCCCAGCT
GGTGGACGCCGATGGCATGACCAGTCTGCATAAGGCTGCTGAGCAGGGGCACGTGGACAT
CTGCTCCCTCCTGCTGCAGCACAGCCCAGCCCTGAAGGCTATCCGGGACCGAAAGGCACG
GCTGGCTTGCGACCTACTGCCCCACAACAGTGACCTGCGGGACCTGCTGGCCGGCTGAGT
GGCCCCCTCCTGTCTCAGGCTGCGTGCAGACGGCACAGACTAGCTCTCCAGGCCCCCTCT
CAGTCACTGCAGGGTGGGAAGCTGAGGCCAGGAGGCCCAGGGAGAGCCCCATCCTGGCCG
CTGTGGAATCGGGGGGAGCAGCTGCACGGGGCTGCAGGGCCCCAGCCTGGACAGACGACC
TCACATTAAATGAGGTCACGTGGAAACGCCTACCCAGTGGGAAAAAATAAAGTTATATCC
TTACCTCGAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|62088314|dbj|BAD92604.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|62088314|dbj|BAD92604.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               650-758, + strand, RNAz p=0.891478

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               650-758, + strand, RNAz p=0.891478

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_016466, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_016466, +

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

Help | Less info


               
               1-147, gnl|bosTau2|chr11 (3450584-3450730)
               

               
               1-147, gnl|canFam2|chr10 (48245181-48245021)
               

               
               1-147, gnl|dasNov1|scaffold_78467 (5308-5156)
               

               
               1-147, gnl|echTel1|scaffold_321045 (46805-46951)
               

               
               1-147, gnl|galGal2|chr12 (2776636-2776769)
               

               
               1-147, gnl|hg17|chr2 (96945495-96945647)
               

               
               1-147, gnl|Hg17|chr2 (96945644-96945498)
               

               
               1-147, gnl|loxAfr1|scaffold_14518 (38545-38394)
               

               
               1-147, gnl|mm7|chr1 (36788463-36788599)
               

               
               1-147, gnl|Mm7|chr1 (36788588-36788466)
               

               
               1-147, gnl|monDom2|scaffold_1 (154492673-154492818)
               

               
               1-147, gnl|oryCun1|scaffold_203141 (627-783)
               

               
               1-147, gnl|panTro1|chr12 (99966132-99966284)
               

               
               1-147, gnl|rheMac2|chr13 (97292879-97293031)
               

               
               1-147, gnl|rn3|chr9 (35492427-35492563)
               


               
               453-847, gnl|bosTau2|chr11 (3456918-3457317)
               

               
               453-847, gnl|Hg17|chr2 (96936057-96935652)
               

               
               453-847, gnl|Mm7|chr1 (36780917-36780521)

Aligned organism(s): 18 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-147, gnl|bosTau2|chr11 (3450584-3450730)
               

               
               1-147, gnl|canFam2|chr10 (48245181-48245021)
               

               
               1-147, gnl|dasNov1|scaffold_78467 (5308-5156)
               

               
               1-147, gnl|echTel1|scaffold_321045 (46805-46951)
               

               
               1-147, gnl|galGal2|chr12 (2776636-2776769)
               

               
               1-147, gnl|hg17|chr2 (96945495-96945647)
               

               
               1-147, gnl|Hg17|chr2 (96945644-96945498)
               

               
               1-147, gnl|loxAfr1|scaffold_14518 (38545-38394)
               

               
               1-147, gnl|mm7|chr1 (36788463-36788599)
               

               
               1-147, gnl|Mm7|chr1 (36788588-36788466)
               

               
               1-147, gnl|monDom2|scaffold_1 (154492673-154492818)
               

               
               1-147, gnl|oryCun1|scaffold_203141 (627-783)
               

               
               1-147, gnl|panTro1|chr12 (99966132-99966284)
               

               
               1-147, gnl|rheMac2|chr13 (97292879-97293031)
               

               
               1-147, gnl|rn3|chr9 (35492427-35492563)
               


               
               453-847, gnl|bosTau2|chr11 (3456918-3457317)
               

               
               453-847, gnl|Hg17|chr2 (96936057-96935652)
               

               
               453-847, gnl|Mm7|chr1 (36780917-36780521)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

Help | Less info


               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fty (0.17584)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               jej (0.0989218)

	1-147, gnl\|bosTau2\|chr11 (3450584-3450730)
	1-147, gnl\|canFam2\|chr10 (48245181-48245021)
	1-147, gnl\|dasNov1\|scaffold_78467 (5308-5156)
	1-147, gnl\|echTel1\|scaffold_321045 (46805-46951)
	1-147, gnl\|galGal2\|chr12 (2776636-2776769)
	1-147, gnl\|hg17\|chr2 (96945495-96945647)
	1-147, gnl\|Hg17\|chr2 (96945644-96945498)
	1-147, gnl\|loxAfr1\|scaffold_14518 (38545-38394)
	1-147, gnl\|mm7\|chr1 (36788463-36788599)
	1-147, gnl\|Mm7\|chr1 (36788588-36788466)
	1-147, gnl\|monDom2\|scaffold_1 (154492673-154492818)
	1-147, gnl\|oryCun1\|scaffold_203141 (627-783)
	1-147, gnl\|panTro1\|chr12 (99966132-99966284)
	1-147, gnl\|rheMac2\|chr13 (97292879-97293031)
	1-147, gnl\|rn3\|chr9 (35492427-35492563)

	453-847, gnl\|bosTau2\|chr11 (3456918-3457317)
	453-847, gnl\|Hg17\|chr2 (96936057-96935652)
	453-847, gnl\|Mm7\|chr1 (36780917-36780521)

	fcc (0.197785)
	fty (0.17584)
	hyp (0.142837)
	ebs (0.118301)
	jej (0.0989218)