Non-Coding RNA Search

Ss1.1-Pig4-TMW8061G06.3

Sequence:


               
               ACAGATGCAGAAACCAGCAGAGGATGGAGGGGCTTCTCTGGCACCGCGTTTGGTTGTAAA
GATTGTACCTGGACCTGTATATTTGTAAAGCTATTTATGGACCCCCCCCCCAGAGCCCGT
ATCCCTGTTGCTCCCCGGGCTCCTAGTGCTTAGCTGGCCGTGTGGCAGAGGTTTAAGTTT
TAACTTATTAACAGTGAGAAGGTTTATGCTTCGTTTAGGGGGGTGGCTGAGGATGCGTCC
AGCACACCATCCGCGGCCGGAGCCGGCCCCCGGCCCCCTGAAGGGGGGAGAGTAGTTTGA
GGTGATGCCAGGGAGGCTGTTTGATTTCCTTTGGCCTTCTTTTGCAGGAGACATAGATGT
CTATAGGATTTTCTTTAGGAGATTTATTTTTTTGAACTTCAAAGCAAGCTGGTATTTTCA
TACAAGTTCTAATTGCCATGTGATCCAGGCAGGGAGGCAGGTTCCGCGGGGGCCAGCCCT
GCGTACAGGCTCAGATGTTATTAGATATTACGAGTTTATATATATCTATATATATAATTT
ATTGAGTTTTTACAAGATGTATTTGCTGTAGATTTAACACTTCTTATGCAATGCTTCTGG
ACTTTTATAGCCCGCACTACCTTTCAGAGCTTGGAAGAGAAAGCTGCAATTTCCGTTTCA
TTACTCTTTGTACCGGTAACAGCCTTGCATTTGGACGGATGTTTTCTGTCGCGGGCTGGG
GTAGGGCTCTGTTCTCATGGCCCCCAGCCTCGTGGGGGCCAAAGGTGTTGGCCCAAACTG
GCAGACGTGCCTTCCGAAGAAAATAAACAGACAACTGGTTCAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGATGCAGAAACCAGCAGAGGATGGAGGGGCTTCTCTGGCACCGCGTTTGGTTGTAAA
GATTGTACCTGGACCTGTATATTTGTAAAGCTATTTATGGACCCCCCCCCCAGAGCCCGT
ATCCCTGTTGCTCCCCGGGCTCCTAGTGCTTAGCTGGCCGTGTGGCAGAGGTTTAAGTTT
TAACTTATTAACAGTGAGAAGGTTTATGCTTCGTTTAGGGGGGTGGCTGAGGATGCGTCC
AGCACACCATCCGCGGCCGGAGCCGGCCCCCGGCCCCCTGAAGGGGGGAGAGTAGTTTGA
GGTGATGCCAGGGAGGCTGTTTGATTTCCTTTGGCCTTCTTTTGCAGGAGACATAGATGT
CTATAGGATTTTCTTTAGGAGATTTATTTTTTTGAACTTCAAAGCAAGCTGGTATTTTCA
TACAAGTTCTAATTGCCATGTGATCCAGGCAGGGAGGCAGGTTCCGCGGGGGCCAGCCCT
GCGTACAGGCTCAGATGTTATTAGATATTACGAGTTTATATATATCTATATATATAATTT
ATTGAGTTTTTACAAGATGTATTTGCTGTAGATTTAACACTTCTTATGCAATGCTTCTGG
ACTTTTATAGCCCGCACTACCTTTCAGAGCTTGGAAGAGAAAGCTGCAATTTCCGTTTCA
TTACTCTTTGTACCGGTAACAGCCTTGCATTTGGACGGATGTTTTCTGTCGCGGGCTGGG
GTAGGGCTCTGTTCTCATGGCCCCCAGCCTCGTGGGGGCCAAAGGTGTTGGCCCAAACTG
GCAGACGTGCCTTCCGAAGAAAATAAACAGACAACTGGTTCAAAAAAAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               64-822, gnl|bosTau2|chr6 (64466063-64466803)
               

               
               64-822, gnl|Hg17|chr4 (1777043-1777819)
               

               
               64-822, gnl|Mm7|chr5 (32799440-32800230)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-822, gnl|bosTau2|chr6 (64466063-64466803)
               

               
               64-822, gnl|Hg17|chr4 (1777043-1777819)
               

               
               64-822, gnl|Mm7|chr5 (32799440-32800230)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.175346)
               

               
               cje (0.165235)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               eje (0.0988338)

	64-822, gnl\|bosTau2\|chr6 (64466063-64466803)
	64-822, gnl\|Hg17\|chr4 (1777043-1777819)
	64-822, gnl\|Mm7\|chr5 (32799440-32800230)

	fbs (0.175346)
	cje (0.165235)
	nmm (0.132802)
	eru (0.120048)
	eje (0.0988338)