Non-Coding RNA Search

Ss1.1-Pig4-TMW8061G09.5

Sequence:


               
               TTAAAATCACATTCAAAAATCGGCAAAGAAACGCCCCGGGAGTGAGTAGACAGGAGGGGA
GGGCGCGCTGACCCAGCCCCGGGGGAGAGGGCGCGACACCACACGGCAGCGCGACTGGCA
CGAGGGGGCATGCTGTGGGCGGGGTGGCGCCCTGGGGGGGCGGTGGCACTGACGGGACGT
GGGGCTGTGGGGCTGGACCGCCGGCGTGGCACACTGAGCGGCCTGGGGTGGGGAAGGCTG
TCCCCCCGGCCCCCTCTCATGTGCTGCCCAGCCAGCCCAGGCTGGCCCCCTGTGGTCCTG
GGCAGAAGAGGCCATGCCCGGCCTGGGGAAAGGGGGCTCGGGGCCAGGCCAGGCCAGGCC
AGCGCAGCACAACCCGCAGGTGCCTTTCTGTGGTCCCTGAGCCTGGGCGCTTGGGGTCGG
AAGGAGAGGGGGCTGCAGTGAGGGCGGCAGCAGCCACCACCAGTGCCCCCCCAGCCAAGC
CCCAGTGTCCAGGGCAGGCAGGAATGGAGGCGGCCGGTGACACGGGGGCTCTTCCCCAAA
GAGGGTGCAGGAGCCCAAGTCACGTGGGAGGCCCTGGGGTCAGGGAGACAATGGCCCCCT
CGTCTGCCAACTGACCAGAGGGCAGGCCAATGCAGGGCTGTGTCCCTGTCACATGAGGGG
CCGCGGAGGGAAAATTCAAGTAGTAACCCTGTGCCGCGGCCTCCCCTGGGGTGGGAGACG
CTGGGGCCGCCCAGCTGTGCTGTAGGCACAGGGCTGGGGGTGGCCCAGCTCCACCTGGCA
CCGTCCCTGGGGAAGGGGCGGGAGGGCCACTGGGGCTGCCGCTCTCCCTGCGCGGGAAGA
CGTCAGGAGGGGGGTGGCCCCGGAGGACAGGGCGGAGGGTGGCTGGACGGGTGGCAGCGG
GAGCCAAGGCAAGCAGGCCCCTCCCTGGGGGCTAGGCCAGGCTGGGGCCACAGGAAATCA
CAATAATTACAAAATAAAACCTTTTCCGCTTGGCGGGAAAAACAAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAAAATCACATTCAAAAATCGGCAAAGAAACGCCCCGGGAGTGAGTAGACAGGAGGGGA
GGGCGCGCTGACCCAGCCCCGGGGGAGAGGGCGCGACACCACACGGCAGCGCGACTGGCA
CGAGGGGGCATGCTGTGGGCGGGGTGGCGCCCTGGGGGGGCGGTGGCACTGACGGGACGT
GGGGCTGTGGGGCTGGACCGCCGGCGTGGCACACTGAGCGGCCTGGGGTGGGGAAGGCTG
TCCCCCCGGCCCCCTCTCATGTGCTGCCCAGCCAGCCCAGGCTGGCCCCCTGTGGTCCTG
GGCAGAAGAGGCCATGCCCGGCCTGGGGAAAGGGGGCTCGGGGCCAGGCCAGGCCAGGCC
AGCGCAGCACAACCCGCAGGTGCCTTTCTGTGGTCCCTGAGCCTGGGCGCTTGGGGTCGG
AAGGAGAGGGGGCTGCAGTGAGGGCGGCAGCAGCCACCACCAGTGCCCCCCCAGCCAAGC
CCCAGTGTCCAGGGCAGGCAGGAATGGAGGCGGCCGGTGACACGGGGGCTCTTCCCCAAA
GAGGGTGCAGGAGCCCAAGTCACGTGGGAGGCCCTGGGGTCAGGGAGACAATGGCCCCCT
CGTCTGCCAACTGACCAGAGGGCAGGCCAATGCAGGGCTGTGTCCCTGTCACATGAGGGG
CCGCGGAGGGAAAATTCAAGTAGTAACCCTGTGCCGCGGCCTCCCCTGGGGTGGGAGACG
CTGGGGCCGCCCAGCTGTGCTGTAGGCACAGGGCTGGGGGTGGCCCAGCTCCACCTGGCA
CCGTCCCTGGGGAAGGGGCGGGAGGGCCACTGGGGCTGCCGCTCTCCCTGCGCGGGAAGA
CGTCAGGAGGGGGGTGGCCCCGGAGGACAGGGCGGAGGGTGGCTGGACGGGTGGCAGCGG
GAGCCAAGGCAAGCAGGCCCCTCCCTGGGGGCTAGGCCAGGCTGGGGCCACAGGAAATCA
CAATAATTACAAAATAAAACCTTTTCCGCTTGGCGGGAAAAACAAATA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               231-835, - strand, RNAz p=0.979565
               

               
               891-1008, - strand, RNAz p=0.944099

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-835, - strand, RNAz p=0.979565
               

               
               891-1008, - strand, RNAz p=0.944099

Predicted microRNA(s): 4 entry(ies)

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Predicted microRNA(s): 4 entry(ies)

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               266-407, - strand, RNAmicro p=0.999973
               

               
               186-395, + strand, RNAmicro p=0.999734
               

               
               646-767, + strand, RNAmicro p=0.990044
               

               
               849-913, + strand, RNAmicro p=0.968203

Predicted microRNA(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               266-407, - strand, RNAmicro p=0.999973
               

               
               186-395, + strand, RNAmicro p=0.999734
               

               
               646-767, + strand, RNAmicro p=0.990044
               

               
               849-913, + strand, RNAmicro p=0.968203

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of AB209588, -
               

               
               3' of AB209588, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AB209588, -
               

               
               3' of AB209588, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1008, gnl|bosTau2|chr29 (36331315-36332318)
               

               
               1-1008, gnl|Hg17|chr11 (66810557-66809549)
               

               
               1-1008, gnl|Mm7|chr19 (4180853-4181835)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1008, gnl|bosTau2|chr29 (36331315-36332318)
               

               
               1-1008, gnl|Hg17|chr11 (66810557-66809549)
               

               
               1-1008, gnl|Mm7|chr19 (4180853-4181835)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cga (0.279096)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               hlv (0.139256)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               nep (0.183925)
               

               
               fhi (0.169578)
               

               
               hlv (0.139256)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)

	231-835, - strand, RNAz p=0.979565
	891-1008, - strand, RNAz p=0.944099

	266-407, - strand, RNAmicro p=0.999973
	186-395, + strand, RNAmicro p=0.999734
	646-767, + strand, RNAmicro p=0.990044
	849-913, + strand, RNAmicro p=0.968203

	1-1008, gnl\|bosTau2\|chr29 (36331315-36332318)
	1-1008, gnl\|Hg17\|chr11 (66810557-66809549)
	1-1008, gnl\|Mm7\|chr19 (4180853-4181835)

	cga (0.279096)
	nep (0.183925)
	fhi (0.169578)
	hlv (0.139256)
	cly (0.120642)
	ebs (0.118301)
	jca (0.11396)
	nbm (0.0993246)