Non-Coding RNA Search

Ss1.1-Pig4-TMW8061G13.5

Sequence:


               
               CAATATGAGATGAAACCTTTCAAGAATTTGTCCTATAATGTGCTCTTAAGTCTGGTAGGT
TGGTCACTTTCACTGCAGGATACATTTATCTACACATTATATACTGGGCATATAATATGT
AAATAAATGGCTTGTAGGAAGGGAATTTAACTGTTTACTTCTTAAAGGTTTTGTTTTTTA
ACATTTGGGGTGTTTCTGGAGAGCCTCACAATTAATTCACCTTTTTTGTTTTTGATGCTA
GTGGCTAGGTGAGTTTCCCCGCCCTCTGTTTTTCCCCCGGCCTTGGCCGTAGTTATGTGG
GTGCAGGGAGAGCTTCGCTACCTTCATGTAGGTGCTCCCAGGACTCATGGCCTTCTCTTC
CCGACGCTGTTTCCACGCCAAGAAAGAAACAGGAAGAAACCCATTTTCTTTTTTATTCCG
AAGCCTCAGCTCAGATCTGGAGAAACAATGATAGAAATTGTATTCCTCCCTACGTGTTAA
CCATAGGGATTTGAACTGGATTCTTGGAATTACTATCTAAAAAACTGGAGCATCGAGCAC
TGTTTCTATCCTACTGGTTTGGAATTTTTTCCATAATGCTACTTACCGCTGACAGCGGCC
TCTCTCCTTGTACATACATGCCTTACATCGTGCTGAACTGGATGTTGTCCTTGTGCTCCG
AAGCATCCGGCTGTACCTGGTGAGTGCAGCTGTGCAGTCCCGTCCGCATTCTGAGTAACC
GTGTTAAGTTCCTAAGGAGTACACAGGAGGAGAATTCAGGTCTTTGCTTGCCTTTGTCAG
GTATACAACACTTGTAATTGCACCATGGAGCATGCTCAGAAATAGTAAATTTGTCTCCCC
CCTGGGATGTGAAAGGTCCGTCCTCCACTGAGAAGTGGTATGGGAGGAGGCTTAATCCCT
TTCCAGAACAGCTACATAGTGCATTGGCTCACTGCAAACTGTCTTGTTGGTTTTTGCTAC
AGGTTTGATGCTGGTTTCATTTGCCAGTTGTGTTGTTTAGTTGAAAAATATGCAGAAAAG
GGTCTTGGGGTGGGGCGGGTGCGGGAGGGGGGCACTGATCGGTCCCTGGCTGGGGACAGG
AGTTTGTTGCTATACTCTTAGTGGCACCTCCTTTGTCAGAACATAGCCAAGATGTGAAAT
TAAAATCGTAGTTCTCTTTATTTAAAAATTCTAATAAATACTCAGACTTTGAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATATGAGATGAAACCTTTCAAGAATTTGTCCTATAATGTGCTCTTAAGTCTGGTAGGT
TGGTCACTTTCACTGCAGGATACATTTATCTACACATTATATACTGGGCATATAATATGT
AAATAAATGGCTTGTAGGAAGGGAATTTAACTGTTTACTTCTTAAAGGTTTTGTTTTTTA
ACATTTGGGGTGTTTCTGGAGAGCCTCACAATTAATTCACCTTTTTTGTTTTTGATGCTA
GTGGCTAGGTGAGTTTCCCCGCCCTCTGTTTTTCCCCCGGCCTTGGCCGTAGTTATGTGG
GTGCAGGGAGAGCTTCGCTACCTTCATGTAGGTGCTCCCAGGACTCATGGCCTTCTCTTC
CCGACGCTGTTTCCACGCCAAGAAAGAAACAGGAAGAAACCCATTTTCTTTTTTATTCCG
AAGCCTCAGCTCAGATCTGGAGAAACAATGATAGAAATTGTATTCCTCCCTACGTGTTAA
CCATAGGGATTTGAACTGGATTCTTGGAATTACTATCTAAAAAACTGGAGCATCGAGCAC
TGTTTCTATCCTACTGGTTTGGAATTTTTTCCATAATGCTACTTACCGCTGACAGCGGCC
TCTCTCCTTGTACATACATGCCTTACATCGTGCTGAACTGGATGTTGTCCTTGTGCTCCG
AAGCATCCGGCTGTACCTGGTGAGTGCAGCTGTGCAGTCCCGTCCGCATTCTGAGTAACC
GTGTTAAGTTCCTAAGGAGTACACAGGAGGAGAATTCAGGTCTTTGCTTGCCTTTGTCAG
GTATACAACACTTGTAATTGCACCATGGAGCATGCTCAGAAATAGTAAATTTGTCTCCCC
CCTGGGATGTGAAAGGTCCGTCCTCCACTGAGAAGTGGTATGGGAGGAGGCTTAATCCCT
TTCCAGAACAGCTACATAGTGCATTGGCTCACTGCAAACTGTCTTGTTGGTTTTTGCTAC
AGGTTTGATGCTGGTTTCATTTGCCAGTTGTGTTGTTTAGTTGAAAAATATGCAGAAAAG
GGTCTTGGGGTGGGGCGGGTGCGGGAGGGGGGCACTGATCGGTCCCTGGCTGGGGACAGG
AGTTTGTTGCTATACTCTTAGTGGCACCTCCTTTGTCAGAACATAGCCAAGATGTGAAAT
TAAAATCGTAGTTCTCTTTATTTAAAAATTCTAATAAATACTCAGACTTTGAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               41-351, - strand, RNAz p=1
               

               
               160-347, - strand, RNAz p=0.98842
               

               
               420-524, - strand, RNAz p=0.550736
               

               
               805-918, + strand, RNAz p=0.947603

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-351, - strand, RNAz p=1
               

               
               160-347, - strand, RNAz p=0.98842
               

               
               420-524, - strand, RNAz p=0.550736
               

               
               805-918, + strand, RNAz p=0.947603

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-1196, gnl|bosTau2|chr23 (8017097-8015902)
               

               
               1-1196, gnl|canFam2|chr12 (6568464-6569252)
               

               
               1-1196, gnl|dasNov1|scaffold_96413 (9095-9890)
               

               
               1-1196, gnl|echTel1|scaffold_292797 (13923-14656)
               

               
               1-1196, gnl|galGal2|chr26 (2967046-2966262)
               

               
               1-1196, gnl|hg17|chr6 (34362914-34363661)
               

               
               1-1196, gnl|Hg17|chr6 (34364116-34362948)
               

               
               1-1196, gnl|loxAfr1|scaffold_44137 (5443-4629)
               

               
               1-1196, gnl|mm7|chr17 (25764989-25765647)
               

               
               1-1196, gnl|Mm7|chr17 (25766042-25765017)
               

               
               1-1196, gnl|monDom2|scaffold_42 (13144868-13144071)
               

               
               1-1196, gnl|oryCun1|scaffold_161488 (20713-21416)
               

               
               1-1196, gnl|panTro1|chr5 (34815473-34816221)
               

               
               1-1196, gnl|rheMac2|chr4 (33992761-33993511)
               

               
               1-1196, gnl|rn3|chr20 (5789230-5789885)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1196, gnl|bosTau2|chr23 (8017097-8015902)
               

               
               1-1196, gnl|canFam2|chr12 (6568464-6569252)
               

               
               1-1196, gnl|dasNov1|scaffold_96413 (9095-9890)
               

               
               1-1196, gnl|echTel1|scaffold_292797 (13923-14656)
               

               
               1-1196, gnl|galGal2|chr26 (2967046-2966262)
               

               
               1-1196, gnl|hg17|chr6 (34362914-34363661)
               

               
               1-1196, gnl|Hg17|chr6 (34364116-34362948)
               

               
               1-1196, gnl|loxAfr1|scaffold_44137 (5443-4629)
               

               
               1-1196, gnl|mm7|chr17 (25764989-25765647)
               

               
               1-1196, gnl|Mm7|chr17 (25766042-25765017)
               

               
               1-1196, gnl|monDom2|scaffold_42 (13144868-13144071)
               

               
               1-1196, gnl|oryCun1|scaffold_161488 (20713-21416)
               

               
               1-1196, gnl|panTro1|chr5 (34815473-34816221)
               

               
               1-1196, gnl|rheMac2|chr4 (33992761-33993511)
               

               
               1-1196, gnl|rn3|chr20 (5789230-5789885)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               csp (0.322373)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               che (0.136314)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.322373)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               che (0.136314)
               

               
               eje (0.0988338)

	41-351, - strand, RNAz p=1
	160-347, - strand, RNAz p=0.98842
	420-524, - strand, RNAz p=0.550736
	805-918, + strand, RNAz p=0.947603

	1-1196, gnl\|bosTau2\|chr23 (8017097-8015902)
	1-1196, gnl\|canFam2\|chr12 (6568464-6569252)
	1-1196, gnl\|dasNov1\|scaffold_96413 (9095-9890)
	1-1196, gnl\|echTel1\|scaffold_292797 (13923-14656)
	1-1196, gnl\|galGal2\|chr26 (2967046-2966262)
	1-1196, gnl\|hg17\|chr6 (34362914-34363661)
	1-1196, gnl\|Hg17\|chr6 (34364116-34362948)
	1-1196, gnl\|loxAfr1\|scaffold_44137 (5443-4629)
	1-1196, gnl\|mm7\|chr17 (25764989-25765647)
	1-1196, gnl\|Mm7\|chr17 (25766042-25765017)
	1-1196, gnl\|monDom2\|scaffold_42 (13144868-13144071)
	1-1196, gnl\|oryCun1\|scaffold_161488 (20713-21416)
	1-1196, gnl\|panTro1\|chr5 (34815473-34816221)
	1-1196, gnl\|rheMac2\|chr4 (33992761-33993511)
	1-1196, gnl\|rn3\|chr20 (5789230-5789885)

	csp (0.322373)
	fbs (0.175346)
	fhi (0.169578)
	che (0.136314)
	eje (0.0988338)