Non-Coding RNA Search

Ss1.1-Pig4-TMW8061G18.3

Sequence:


               
               ACCCCATAAACTATATTATGTGAGGTCTGGCTTCCCCTGGGATAGCTGGGTTGGCCTCTG
AGCCTTACCTGTAATGTGGCCGCCCTCCCCGGGTTAAGTTTCTGTTAGGCCTTGTTTCAC
TGGTATATTCTGTTCCAGAGTGTTCATTCACACAGGTGAAAAAGTCAAAATAATGAAAGT
TGCCTAAAAACATGCCGATTAGCCTGTATTTTCCCAGAACTGTTTGATTCACACACACTT
TGTAGCATAACCAAAGGCTGTCGGGAGAAGAGCACCACCATGGTGTCTGGTTTACTGGTC
ACTGTGTGTGGCTGCTTCCGCCAGGTTCTGCTGCACTGAGTGGTGTGGGGAAAGGGTCCA
CATCTCCAGGACTCGTCTGCACAAACCTAAGTGCCCCGCTCTTATTGGATGCCAAGGGGA
CACCTCCTCAATGGACATCTTCTCCCTTAAGTTCGAGCACCGCGCCAAGACTTTTCTGCA
TGCTGCATGTGTGAGCTGTCCCTCATTCCTGCAGACACCTGCTCCCCTGCCTCACCTGCT
CCAGCTCCTCAAGAAGGGCCAGGGCAGCCTCCCGGGCAGGATGGGCCCCTGGATAATGAG
TCACCTGCACTGGGAGAAGCGGTGTCTTCCCTTGAAAGCTGGGACCTGCAGTGGAGGACA
TTGTTTTGTGCCCCTAGGGAAGGTCAGGGAACGTGGGGACCAACAAAGCATCTCCAGCTG
TGAGAAACCACAGAAGTCCGCTCTGTTAACCCACAGTGCCAAAGCTCGGGAAAGACGTTC
CCAGGTGGAGGGACATGCGGCGACAGGCGGGCTGAAGGTCGTCCTTCTCATCAAGTGCCC
CATGAGTTCCCTTGGCCCCAGAGGCCAGGGTCAGAGGTCCCCAGTTCCCATCAGCAAATC
GCACCTTGTCTGAACAGTTGTTCACCACCTTTTTGCACATGGGTTCCACAGCCTTGCACT
AGTGTCCGAGTTCTGTAATGTCTTTTTTTGACCCTGTGTTCTCAAATGCCCCGCGAAGCC
AAGAGGGCGGGGGTGCACTTTAGGAAACCGGCACTTGCCAGGAGGAAGACAGTCCCACCC
CTGAGCTCCTTGAACCCCAGTCATCTCCTGCCTCGGAATGCAAATAGTTCTTATTTGCCA
AAGAACAATGAATTGGGCCCAAAGAGCAAGTATAGCATTTCACCCTTTGGAACTGTAAAC
GCACAACTCAGGAGCTGTCCTCCGATTCCTCGAGCAACTTAAGCTGCAGAGCCGAGAGTG
AGACTGGTGTGGGTCTGTCCTCCGCAGCCCTGAGCTCCCCAAGCAGAGTTTTTGTTCTTT
CCTTGTCCCGGTTGAAGGTCACCTTGGTTTTACAGAAGAAAATGCTGCATAGGAAAAATG
AAATGCCTTTTATTCAGATGTGTTTTATCCATGTCACCCACTATCCTGTACTTATTTTTC
ATGTATGTTGTACATTCTATTCCTGTAATTATTGTACAACCCTTTAAGCGTTGTAAAATC
ATTTTGGAAATTGTGCCTGCTAGTTATGCAATAAACAGGCTCTATAAGTGTCAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCCATAAACTATATTATGTGAGGTCTGGCTTCCCCTGGGATAGCTGGGTTGGCCTCTG
AGCCTTACCTGTAATGTGGCCGCCCTCCCCGGGTTAAGTTTCTGTTAGGCCTTGTTTCAC
TGGTATATTCTGTTCCAGAGTGTTCATTCACACAGGTGAAAAAGTCAAAATAATGAAAGT
TGCCTAAAAACATGCCGATTAGCCTGTATTTTCCCAGAACTGTTTGATTCACACACACTT
TGTAGCATAACCAAAGGCTGTCGGGAGAAGAGCACCACCATGGTGTCTGGTTTACTGGTC
ACTGTGTGTGGCTGCTTCCGCCAGGTTCTGCTGCACTGAGTGGTGTGGGGAAAGGGTCCA
CATCTCCAGGACTCGTCTGCACAAACCTAAGTGCCCCGCTCTTATTGGATGCCAAGGGGA
CACCTCCTCAATGGACATCTTCTCCCTTAAGTTCGAGCACCGCGCCAAGACTTTTCTGCA
TGCTGCATGTGTGAGCTGTCCCTCATTCCTGCAGACACCTGCTCCCCTGCCTCACCTGCT
CCAGCTCCTCAAGAAGGGCCAGGGCAGCCTCCCGGGCAGGATGGGCCCCTGGATAATGAG
TCACCTGCACTGGGAGAAGCGGTGTCTTCCCTTGAAAGCTGGGACCTGCAGTGGAGGACA
TTGTTTTGTGCCCCTAGGGAAGGTCAGGGAACGTGGGGACCAACAAAGCATCTCCAGCTG
TGAGAAACCACAGAAGTCCGCTCTGTTAACCCACAGTGCCAAAGCTCGGGAAAGACGTTC
CCAGGTGGAGGGACATGCGGCGACAGGCGGGCTGAAGGTCGTCCTTCTCATCAAGTGCCC
CATGAGTTCCCTTGGCCCCAGAGGCCAGGGTCAGAGGTCCCCAGTTCCCATCAGCAAATC
GCACCTTGTCTGAACAGTTGTTCACCACCTTTTTGCACATGGGTTCCACAGCCTTGCACT
AGTGTCCGAGTTCTGTAATGTCTTTTTTTGACCCTGTGTTCTCAAATGCCCCGCGAAGCC
AAGAGGGCGGGGGTGCACTTTAGGAAACCGGCACTTGCCAGGAGGAAGACAGTCCCACCC
CTGAGCTCCTTGAACCCCAGTCATCTCCTGCCTCGGAATGCAAATAGTTCTTATTTGCCA
AAGAACAATGAATTGGGCCCAAAGAGCAAGTATAGCATTTCACCCTTTGGAACTGTAAAC
GCACAACTCAGGAGCTGTCCTCCGATTCCTCGAGCAACTTAAGCTGCAGAGCCGAGAGTG
AGACTGGTGTGGGTCTGTCCTCCGCAGCCCTGAGCTCCCCAAGCAGAGTTTTTGTTCTTT
CCTTGTCCCGGTTGAAGGTCACCTTGGTTTTACAGAAGAAAATGCTGCATAGGAAAAATG
AAATGCCTTTTATTCAGATGTGTTTTATCCATGTCACCCACTATCCTGTACTTATTTTTC
ATGTATGTTGTACATTCTATTCCTGTAATTATTGTACAACCCTTTAAGCGTTGTAAAATC
ATTTTGGAAATTGTGCCTGCTAGTTATGCAATAAACAGGCTCTATAAGTGTCAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               240-356, + strand, RNAz p=0.66639

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-356, + strand, RNAz p=0.66639

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               288-336, + strand, RNAmicro p=0.969014

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               288-336, + strand, RNAmicro p=0.969014

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of D63482, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of D63482, +

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               19-578, gnl|bosTau2|chr17 (35946882-35946317)
               

               
               19-578, gnl|Hg17|chr12 (108831891-108831327)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-578, gnl|bosTau2|chr17 (35946882-35946317)
               

               
               19-578, gnl|Hg17|chr12 (108831891-108831327)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

Help | Less info


               
               cki (0.330469)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               cbl (0.229595)
               

               
               cty (0.20816)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.330469)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               cbl (0.229595)
               

               
               cty (0.20816)
               

               
               nlu (0.191681)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               med (0.116252)

	19-578, gnl\|bosTau2\|chr17 (35946882-35946317)
	19-578, gnl\|Hg17\|chr12 (108831891-108831327)

	cki (0.330469)
	che (0.272628)
	fce (0.271592)
	cbl (0.229595)
	cty (0.20816)
	nlu (0.191681)
	sag (0.182715)
	fty (0.17584)
	duo (0.172801)
	cut (0.169924)
	cje (0.165235)
	cli (0.152812)
	cag (0.151194)
	isp (0.150376)
	liv (0.146284)
	pla (0.133672)
	ute (0.132784)
	thg (0.126791)
	eru (0.120048)
	clu (0.119646)
	med (0.116252)