Non-Coding RNA Search

Ss1.1-Pig4-TMW8061G24.3

Sequence:


               
               TGCGCGTGTGTGAGGCCTAGGTCTCCCTCTAGGAACAAGGAAGAGGGAGAGAACGAGAAG
GGCGTGGCTCCACTCCCCGCCCTATCCCCACCCGCGGCAGAAGGCCAAGGCCGGGTCCCT
GCAGGAGCCGGCCTCCCACCAAGCAAAGTCCCGCGGGCAGAAATGGAGCTCGGCCCCTTT
AAATCCCGCGCGGGAACGCCCGCAGCCGCGCCGGACCCGGATCTGCGGCTGGGAATTGCC
AGTCTCGGCGTGTGCTCCCTGCGCGGCTCCTCGCAGCGCCTTCCGCCCCGCGTGCCGGCT
CAGTGCCCCGGGCCGCGAGGGCTCCGCGCCCGTGGGGAGAATGAGCCGCATCTACCACGA
CAGCGCCCTCCAGAACAAAGCGGTGCAGAGCGCGCGGCTGCCTGGGGCCTGGGACCCCGC
CGCCCACCAGGGGGGAGATGGTGTCCTGCTGGAGGGAGAGCTGGTCGATGTATCACGGCA
CAGCATCTCAGATGCCCATGGCAGGAAGGAGCGCTACTACGTGCTGTATATCCGGCCCAG
TCGCATCCATCGCCGTAAATTTGATCCCAAGGGAAATGAAATCGAGCCCAACTTCAGCGC
CACCAGGAAGGTGAACACAGGCTTCCTCATGTCATCCTACAAGGTGGAGGCCAAGGGAGA
CACCGACAGTCTCTCGCCCGAAGCACTGAAGGGGCTGGTGAATAAGCCAGAGCTGCTTGC
GCTGACTGAGAGCCTCACCCCCGACCAGACGGTGGCATTCTGGATGCCTGAGTCAGAGAT
GGAGGCCATGGAGCTCGAGATAGGGGCTGGGGTCCGGCTGAAAACTCGTGGTGATGGTCC
CTTCCTGGAGTCATTAGCCAAACTTGAAGCTGGAACAGTGACCAAGTGTAATTTCGCTGG
TGATGGAAAGACGGGAGCGTCCTGGACAGACAACATCATGGCCCAGAAGTCTTGGGAGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGCGTGTGTGAGGCCTAGGTCTCCCTCTAGGAACAAGGAAGAGGGAGAGAACGAGAAG
GGCGTGGCTCCACTCCCCGCCCTATCCCCACCCGCGGCAGAAGGCCAAGGCCGGGTCCCT
GCAGGAGCCGGCCTCCCACCAAGCAAAGTCCCGCGGGCAGAAATGGAGCTCGGCCCCTTT
AAATCCCGCGCGGGAACGCCCGCAGCCGCGCCGGACCCGGATCTGCGGCTGGGAATTGCC
AGTCTCGGCGTGTGCTCCCTGCGCGGCTCCTCGCAGCGCCTTCCGCCCCGCGTGCCGGCT
CAGTGCCCCGGGCCGCGAGGGCTCCGCGCCCGTGGGGAGAATGAGCCGCATCTACCACGA
CAGCGCCCTCCAGAACAAAGCGGTGCAGAGCGCGCGGCTGCCTGGGGCCTGGGACCCCGC
CGCCCACCAGGGGGGAGATGGTGTCCTGCTGGAGGGAGAGCTGGTCGATGTATCACGGCA
CAGCATCTCAGATGCCCATGGCAGGAAGGAGCGCTACTACGTGCTGTATATCCGGCCCAG
TCGCATCCATCGCCGTAAATTTGATCCCAAGGGAAATGAAATCGAGCCCAACTTCAGCGC
CACCAGGAAGGTGAACACAGGCTTCCTCATGTCATCCTACAAGGTGGAGGCCAAGGGAGA
CACCGACAGTCTCTCGCCCGAAGCACTGAAGGGGCTGGTGAATAAGCCAGAGCTGCTTGC
GCTGACTGAGAGCCTCACCCCCGACCAGACGGTGGCATTCTGGATGCCTGAGTCAGAGAT
GGAGGCCATGGAGCTCGAGATAGGGGCTGGGGTCCGGCTGAAAACTCGTGGTGATGGTCC
CTTCCTGGAGTCATTAGCCAAACTTGAAGCTGGAACAGTGACCAAGTGTAATTTCGCTGG
TGATGGAAAGACGGGAGCGTCCTGGACAGACAACATCATGGCCCAGAAGTCTTGGGAGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9D0A3_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9D0A3_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               20-136, - strand, RNAz p=0.972231

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               20-136, - strand, RNAz p=0.972231

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               20-433, gnl|bosTau2|chr21 (15305810-15306227)
               

               
               20-433, gnl|Hg17|chr15 (88257376-88256979)
               


               
               507-641, gnl|bosTau2|chr21 (15310967-15311101)
               

               
               507-641, gnl|Hg17|chr15 (88252650-88252516)
               

               
               507-641, gnl|Mm7|chr7 (75797258-75797124)
               


               
               642-848, gnl|bosTau2|chr21 (15312096-15312302)
               

               
               642-848, gnl|canFam2|chr3 (55733734-55733882)
               

               
               642-848, gnl|danRer3|chr18 (26364832-26364687)
               

               
               642-848, gnl|dasNov1|scaffold_166804 (895-752)
               

               
               642-848, gnl|echTel1|scaffold_204036 (149-4)
               

               
               642-848, gnl|fr1|chrUn (217468220-217468072)
               

               
               642-848, gnl|hg17|chr15 (88248003-88248151)
               

               
               642-848, gnl|Hg17|chr15 (88248219-88248013)
               

               
               642-848, gnl|mm7|chr7 (75795713-75795861)
               

               
               642-848, gnl|Mm7|chr7 (75795929-75795723)
               

               
               642-848, gnl|monDom2|scaffold_45 (10457025-10456879)
               

               
               642-848, gnl|panTro1|chr16 (89173819-89173967)
               

               
               642-848, gnl|rheMac2|chr7 (69539532-69539680)
               

               
               642-848, gnl|rn3|chr1 (135776732-135776880)
               

               
               642-848, gnl|tetNig1|chrUn_random (96531039-96530897)
               

               
               642-848, gnl|xenTro1|scaffold_130 (309211-309064)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-433, gnl|bosTau2|chr21 (15305810-15306227)
               

               
               20-433, gnl|Hg17|chr15 (88257376-88256979)
               


               
               507-641, gnl|bosTau2|chr21 (15310967-15311101)
               

               
               507-641, gnl|Hg17|chr15 (88252650-88252516)
               

               
               507-641, gnl|Mm7|chr7 (75797258-75797124)
               


               
               642-848, gnl|bosTau2|chr21 (15312096-15312302)
               

               
               642-848, gnl|canFam2|chr3 (55733734-55733882)
               

               
               642-848, gnl|danRer3|chr18 (26364832-26364687)
               

               
               642-848, gnl|dasNov1|scaffold_166804 (895-752)
               

               
               642-848, gnl|echTel1|scaffold_204036 (149-4)
               

               
               642-848, gnl|fr1|chrUn (217468220-217468072)
               

               
               642-848, gnl|hg17|chr15 (88248003-88248151)
               

               
               642-848, gnl|Hg17|chr15 (88248219-88248013)
               

               
               642-848, gnl|mm7|chr7 (75795713-75795861)
               

               
               642-848, gnl|Mm7|chr7 (75795929-75795723)
               

               
               642-848, gnl|monDom2|scaffold_45 (10457025-10456879)
               

               
               642-848, gnl|panTro1|chr16 (89173819-89173967)
               

               
               642-848, gnl|rheMac2|chr7 (69539532-69539680)
               

               
               642-848, gnl|rn3|chr1 (135776732-135776880)
               

               
               642-848, gnl|tetNig1|chrUn_random (96531039-96530897)
               

               
               642-848, gnl|xenTro1|scaffold_130 (309211-309064)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ton (0.1755)
               

               
               jca (0.11396)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               jca (0.11396)

	20-433, gnl\|bosTau2\|chr21 (15305810-15306227)
	20-433, gnl\|Hg17\|chr15 (88257376-88256979)

	507-641, gnl\|bosTau2\|chr21 (15310967-15311101)
	507-641, gnl\|Hg17\|chr15 (88252650-88252516)
	507-641, gnl\|Mm7\|chr7 (75797258-75797124)

	642-848, gnl\|bosTau2\|chr21 (15312096-15312302)
	642-848, gnl\|canFam2\|chr3 (55733734-55733882)
	642-848, gnl\|danRer3\|chr18 (26364832-26364687)
	642-848, gnl\|dasNov1\|scaffold_166804 (895-752)
	642-848, gnl\|echTel1\|scaffold_204036 (149-4)
	642-848, gnl\|fr1\|chrUn (217468220-217468072)
	642-848, gnl\|hg17\|chr15 (88248003-88248151)
	642-848, gnl\|Hg17\|chr15 (88248219-88248013)
	642-848, gnl\|mm7\|chr7 (75795713-75795861)
	642-848, gnl\|Mm7\|chr7 (75795929-75795723)
	642-848, gnl\|monDom2\|scaffold_45 (10457025-10456879)
	642-848, gnl\|panTro1\|chr16 (89173819-89173967)
	642-848, gnl\|rheMac2\|chr7 (69539532-69539680)
	642-848, gnl\|rn3\|chr1 (135776732-135776880)
	642-848, gnl\|tetNig1\|chrUn_random (96531039-96530897)
	642-848, gnl\|xenTro1\|scaffold_130 (309211-309064)