Ss1.1-Pig4-TMW8061H04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCCGGGCGCCGCCGGGTCCTGCCACGTCCGAGGCCTGGAGCCGCCACCACCTCTGCTGT TGCCACCATGGTGTCAGTAATTAACACTGTGGATACTTCCCATGAGGACATGATACATGA TGCCCAGATGGACTACTATGGCACCCGTCTGGCAACCTGCTCATCAGACAGGTCCGTCAA AATCTTCGATGTGCGCAACGGAGGGCAGATCCTCATCGCCGACCTCAGGGGTCATGAAGG TCCTGTGTGGCAAGTGGCCTGGGCCCACCCCATGTATGGCAATATCCTGGCATCCTGCTC CTATGACCGGAAGGTCATTATCTGGAAAGAGGAGAATGGCACTTGGGAGAAGACACATGA GCACACAGGACACGATTCCTCAGTAAATTCTGTGTGCTGGGCCCCCCACGACTATGGCCT GATCCTGGCCTGTGGGAGCTCGGATGGGGCCATCTCCCTGCTGACCTACACTGGCTTGGG CCAGTGGGAAGTGAAGAAGATCAACAATGCTCACACTATTGGCTGCAATGCCGTCAGTTG GGCCCCTGCTGTTGTACCCGGAAGCCTCATAGACCAGCCATCTGGGCAGAAGCCCAACTA CATCAAGAAGTTTGCATCAGGCGGCTGTGACAACCTCATCAAACTGTGGAAGGAGGAAGA GGACGGCCAGTGGAAGGAAGAGCAGAAGTTGGAAGCACACAGTGACTGGGTTCGAGATGT GGCCTGGGCCCCGTCCATTGGTCTGCCCACCAGCACCATTGCCAGCTGTTCCCAGGACGG TCGAGTGTTTATTTGGACCTGTGACGATGCCTCAGGCAATACATGGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCCGGGCGCCGCCGGGTCCTGCCACGTCCGAGGCCTGGAGCCGCCACCACCTCTGCTGT TGCCACCATGGTGTCAGTAATTAACACTGTGGATACTTCCCATGAGGACATGATACATGA TGCCCAGATGGACTACTATGGCACCCGTCTGGCAACCTGCTCATCAGACAGGTCCGTCAA AATCTTCGATGTGCGCAACGGAGGGCAGATCCTCATCGCCGACCTCAGGGGTCATGAAGG TCCTGTGTGGCAAGTGGCCTGGGCCCACCCCATGTATGGCAATATCCTGGCATCCTGCTC CTATGACCGGAAGGTCATTATCTGGAAAGAGGAGAATGGCACTTGGGAGAAGACACATGA GCACACAGGACACGATTCCTCAGTAAATTCTGTGTGCTGGGCCCCCCACGACTATGGCCT GATCCTGGCCTGTGGGAGCTCGGATGGGGCCATCTCCCTGCTGACCTACACTGGCTTGGG CCAGTGGGAAGTGAAGAAGATCAACAATGCTCACACTATTGGCTGCAATGCCGTCAGTTG GGCCCCTGCTGTTGTACCCGGAAGCCTCATAGACCAGCCATCTGGGCAGAAGCCCAACTA CATCAAGAAGTTTGCATCAGGCGGCTGTGACAACCTCATCAAACTGTGGAAGGAGGAAGA GGACGGCCAGTGGAAGGAAGAGCAGAAGTTGGAAGCACACAGTGACTGGGTTCGAGATGT GGCCTGGGCCCCGTCCATTGGTCTGCCCACCAGCACCATTGCCAGCTGTTCCCAGGACGG TCGAGTGTTTATTTGGACCTGTGACGATGCCTCAGGCAATACATGGTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 116-231, gnl|bosTau2|chr22 (44616994-44616879) | |
| 116-231, gnl|canFam2|chr20 (11050129-11050006) | |
| 116-231, gnl|danRer3|chr22 (42925524-42925402) | |
| 116-231, gnl|dasNov1|scaffold_21254 (4861-4746) | |
| 116-231, gnl|echTel1|scaffold_214139 (3974-4097) | |
| 116-231, gnl|galGal2|chr12 (19375782-19375905) | |
| 116-231, gnl|hg17|chr3 (10332006-10332129) | |
| 116-231, gnl|Hg17|chr3 (10332120-10332005) | |
| 116-231, gnl|loxAfr1|scaffold_5974 (88070-87947) | |
| 116-231, gnl|mm7|chr6 (113897303-113897426) | |
| 116-231, gnl|Mm7|chr6 (113897417-113897302) | |
| 116-231, gnl|monDom2|scaffold_5 (37056616-37056739) | |
| 116-231, gnl|oryCun1|scaffold_212298 (47888-48011) | |
| 116-231, gnl|panTro1|chr2 (10726380-10726503) | |
| 116-231, gnl|rheMac2|chr2 (50710372-50710249) | |
| 116-231, gnl|rn3|chr4 (149891009-149891132) | |
| 116-231, gnl|tetNig1|chr11 (11021338-11021459) | |
| 116-231, gnl|xenTro1|scaffold_172 (1525058-1525179) | |
| 233-383, gnl|bosTau2|chr22 (44614412-44614262) | |
| 233-383, gnl|Hg17|chr3 (10329413-10329263) | |
| 233-383, gnl|Mm7|chr6 (113896137-113895987) | |
| 518-652, gnl|bosTau2|chr9 (21384661-21384795) | |
| 518-652, gnl|canFam2|chr20 (11066573-11066393) | |
| 518-652, gnl|danRer3|chr22 (42936766-42936597) | |
| 518-652, gnl|dasNov1|scaffold_21254 (5282-5148) | |
| 518-652, gnl|echTel1|scaffold_236141 (7463-7632) | |
| 518-652, gnl|galGal2|chr12 (19373293-19373458) | |
| 518-652, gnl|hg17|chr3 (10322234-10322410) | |
| 518-652, gnl|Hg17|chr3 (10322376-10322242) | |
| 518-652, gnl|loxAfr1|scaffold_5974 (96752-96574) | |
| 518-652, gnl|mm7|chr6 (113891696-113891878) | |
| 518-652, gnl|Mm7|chr6 (113891837-113891703) | |
| 518-652, gnl|monDom2|scaffold_5 (37049429-37049607) | |
| 518-652, gnl|panTro1|chr2 (10716615-10716791) | |
| 518-652, gnl|rheMac2|chr2 (50720524-50720348) | |
| 518-652, gnl|rn3|chr4 (149884729-149884905) | |
| 518-652, gnl|tetNig1|chr11 (11020571-11020719) | |
| 518-652, gnl|xenTro1|scaffold_172 (1523851-1524014) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 116-231, gnl|bosTau2|chr22 (44616994-44616879) | |
| 116-231, gnl|canFam2|chr20 (11050129-11050006) | |
| 116-231, gnl|danRer3|chr22 (42925524-42925402) | |
| 116-231, gnl|dasNov1|scaffold_21254 (4861-4746) | |
| 116-231, gnl|echTel1|scaffold_214139 (3974-4097) | |
| 116-231, gnl|galGal2|chr12 (19375782-19375905) | |
| 116-231, gnl|hg17|chr3 (10332006-10332129) | |
| 116-231, gnl|Hg17|chr3 (10332120-10332005) | |
| 116-231, gnl|loxAfr1|scaffold_5974 (88070-87947) | |
| 116-231, gnl|mm7|chr6 (113897303-113897426) | |
| 116-231, gnl|Mm7|chr6 (113897417-113897302) | |
| 116-231, gnl|monDom2|scaffold_5 (37056616-37056739) | |
| 116-231, gnl|oryCun1|scaffold_212298 (47888-48011) | |
| 116-231, gnl|panTro1|chr2 (10726380-10726503) | |
| 116-231, gnl|rheMac2|chr2 (50710372-50710249) | |
| 116-231, gnl|rn3|chr4 (149891009-149891132) | |
| 116-231, gnl|tetNig1|chr11 (11021338-11021459) | |
| 116-231, gnl|xenTro1|scaffold_172 (1525058-1525179) | |
| 233-383, gnl|bosTau2|chr22 (44614412-44614262) | |
| 233-383, gnl|Hg17|chr3 (10329413-10329263) | |
| 233-383, gnl|Mm7|chr6 (113896137-113895987) | |
| 518-652, gnl|bosTau2|chr9 (21384661-21384795) | |
| 518-652, gnl|canFam2|chr20 (11066573-11066393) | |
| 518-652, gnl|danRer3|chr22 (42936766-42936597) | |
| 518-652, gnl|dasNov1|scaffold_21254 (5282-5148) | |
| 518-652, gnl|echTel1|scaffold_236141 (7463-7632) | |
| 518-652, gnl|galGal2|chr12 (19373293-19373458) | |
| 518-652, gnl|hg17|chr3 (10322234-10322410) | |
| 518-652, gnl|Hg17|chr3 (10322376-10322242) | |
| 518-652, gnl|loxAfr1|scaffold_5974 (96752-96574) | |
| 518-652, gnl|mm7|chr6 (113891696-113891878) | |
| 518-652, gnl|Mm7|chr6 (113891837-113891703) | |
| 518-652, gnl|monDom2|scaffold_5 (37049429-37049607) | |
| 518-652, gnl|panTro1|chr2 (10716615-10716791) | |
| 518-652, gnl|rheMac2|chr2 (50720524-50720348) | |
| 518-652, gnl|rn3|chr4 (149884729-149884905) | |
| 518-652, gnl|tetNig1|chr11 (11020571-11020719) | |
| 518-652, gnl|xenTro1|scaffold_172 (1523851-1524014) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.136314) | |
| med (0.116252) |