Non-Coding RNA Search

Ss1.1-Pig4-TMW8061H10.5

Sequence:


               
               TGAGATCCGAGTGTCGGGTTCCCTCTGTGCACTCCCGCTAGCCGAGGGGTTCTCCATCTG
AAATAAGGTCTGAAATGACTGACCCCAAGGTGATTCTTCCAGCGCGTGGAGAACTCACCC
AAGCCTGAGTTCCAGCTAACTCCCTCCCTCCTTCCCCTCCGAGGCTTCAAGTGGGCGGGC
CTCCCTCCCCGGCTTCTCCTAGATTGGTCAGGAGAACCCACCAATGGGGAGCTCTGGGAG
GCGGACCTAGAACGCCACCAGATTGAGGAAGACAAGCAAATTTCAAGTTGGCTGCGGCGT
GGGCTCCGTGGGGGAGGGGCAGCAGGTTTTCTCACTGGATCTCTGAATCCTCAGGCCTCC
TCCACCATGGCCAGCCGGAGTGGGGGCCGGGGTCGTGGCCGGGGCCAGTTGACCTTCAAC
ATGGAGGCTGTGGGCATTGGGAAGGGGGATGCCTTGCCCCCACCCACCCTGCAGCCTTCG
CCACTCTTCCCTCCCTTGGAGTTCCGCCCAGTGCCTCTGCCCTCAGGAGAGGAAGGGGAA
TATGTCCTGGCACTGAAGCAGGAGCTACGAGGGGCCATGAGGCAGCTCCCCTACTTCATC
CGGCCTGCTGTCCCCAAAAGAGATGTGGAACGTTACTCAGACAAGTATCAGATGTCAGGG
CCAGTTGACAGTGCCATCGACTGGAACCCCGATTGGCGACGTCTACCCAGGGAGCTAAAG
ATCCGAGTGCGGAAGATACAGAAGGAACGGACCACCATTCTACTTCCCAAGAGGCCCCTT
AAGACCACAGAGGATAAGGAGGAAAATACAGAAACTAGAGACCCTGGAGAAGAAGGAGGA
AGAAGTAACTTCAGAGGAAGACGAAGAGAAAGAAGAAGAAGAAGAGAAAGAAGAGGAAGA
GGAAGAGGAGTATGACGAAGAAGAGCATGAAGAGGAAACTGATTACATCATGTCATATTT
TGACAATGGAGAGGACTTTGGGGGTGACAGTGATGACAATATGGATGAGGCTATATACTG
AAGAAGGACCCTGAACAATACCTTGGACCCTCATATCTTTCTTGATTTAGGGTACAGAGA
GTAACTCCTCCCTACTATTTGGTTTTGTGAATAATCAAATCATTTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGATCCGAGTGTCGGGTTCCCTCTGTGCACTCCCGCTAGCCGAGGGGTTCTCCATCTG
AAATAAGGTCTGAAATGACTGACCCCAAGGTGATTCTTCCAGCGCGTGGAGAACTCACCC
AAGCCTGAGTTCCAGCTAACTCCCTCCCTCCTTCCCCTCCGAGGCTTCAAGTGGGCGGGC
CTCCCTCCCCGGCTTCTCCTAGATTGGTCAGGAGAACCCACCAATGGGGAGCTCTGGGAG
GCGGACCTAGAACGCCACCAGATTGAGGAAGACAAGCAAATTTCAAGTTGGCTGCGGCGT
GGGCTCCGTGGGGGAGGGGCAGCAGGTTTTCTCACTGGATCTCTGAATCCTCAGGCCTCC
TCCACCATGGCCAGCCGGAGTGGGGGCCGGGGTCGTGGCCGGGGCCAGTTGACCTTCAAC
ATGGAGGCTGTGGGCATTGGGAAGGGGGATGCCTTGCCCCCACCCACCCTGCAGCCTTCG
CCACTCTTCCCTCCCTTGGAGTTCCGCCCAGTGCCTCTGCCCTCAGGAGAGGAAGGGGAA
TATGTCCTGGCACTGAAGCAGGAGCTACGAGGGGCCATGAGGCAGCTCCCCTACTTCATC
CGGCCTGCTGTCCCCAAAAGAGATGTGGAACGTTACTCAGACAAGTATCAGATGTCAGGG
CCAGTTGACAGTGCCATCGACTGGAACCCCGATTGGCGACGTCTACCCAGGGAGCTAAAG
ATCCGAGTGCGGAAGATACAGAAGGAACGGACCACCATTCTACTTCCCAAGAGGCCCCTT
AAGACCACAGAGGATAAGGAGGAAAATACAGAAACTAGAGACCCTGGAGAAGAAGGAGGA
AGAAGTAACTTCAGAGGAAGACGAAGAGAAAGAAGAAGAAGAAGAGAAAGAAGAGGAAGA
GGAAGAGGAGTATGACGAAGAAGAGCATGAAGAGGAAACTGATTACATCATGTCATATTT
TGACAATGGAGAGGACTTTGGGGGTGACAGTGATGACAATATGGATGAGGCTATATACTG
AAGAAGGACCCTGAACAATACCTTGGACCCTCATATCTTTCTTGATTTAGGGTACAGAGA
GTAACTCCTCCCTACTATTTGGTTTTGTGAATAATCAAATCATTTGAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9BT43_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9BT43_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               144-303, + strand, RNAz p=0.663757

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               144-303, + strand, RNAz p=0.663757

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-327, gnl|bosTau2|chr3 (15392843-15392509)
               

               
               1-327, gnl|Hg17|chr1 (142959706-142959364)
               


               
               493-634, gnl|bosTau2|chr3 (15351574-15351431)
               

               
               493-634, gnl|Hg17|chr1 (142948825-142948670)
               

               
               493-634, gnl|Mm7|chr3 (96455723-96455568)
               


               
               819-938, gnl|bosTau2|chr3 (15349520-15349401)
               

               
               819-938, gnl|canFam2|chr17 (61843970-61843800)
               

               
               819-938, gnl|dasNov1|scaffold_4243 (31948-32118)
               

               
               819-938, gnl|hg17|chr1 (142945978-142946126)
               

               
               819-938, gnl|Hg17|chr1 (142946150-142946031)
               

               
               819-938, gnl|mm7|chr3 (96453703-96453839)
               

               
               819-938, gnl|Mm7|chr3 (96453863-96453744)
               

               
               819-938, gnl|monDom2|scaffold_44 (2422981-2422837)
               

               
               819-938, gnl|oryCun1|scaffold_211503 (5274-5129)
               

               
               819-938, gnl|panTro1|chr1_random (17665500-17665352)
               

               
               819-938, gnl|rheMac2|chr1 (126180609-126180439)
               

               
               819-938, gnl|rn3|chr2 (191340508-191340653)
               


               
               1013-1126, gnl|bosTau2|chr3 (15348211-15348098)
               

               
               1013-1126, gnl|Mm7|chr3 (96452440-96451963)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-327, gnl|bosTau2|chr3 (15392843-15392509)
               

               
               1-327, gnl|Hg17|chr1 (142959706-142959364)
               


               
               493-634, gnl|bosTau2|chr3 (15351574-15351431)
               

               
               493-634, gnl|Hg17|chr1 (142948825-142948670)
               

               
               493-634, gnl|Mm7|chr3 (96455723-96455568)
               


               
               819-938, gnl|bosTau2|chr3 (15349520-15349401)
               

               
               819-938, gnl|canFam2|chr17 (61843970-61843800)
               

               
               819-938, gnl|dasNov1|scaffold_4243 (31948-32118)
               

               
               819-938, gnl|hg17|chr1 (142945978-142946126)
               

               
               819-938, gnl|Hg17|chr1 (142946150-142946031)
               

               
               819-938, gnl|mm7|chr3 (96453703-96453839)
               

               
               819-938, gnl|Mm7|chr3 (96453863-96453744)
               

               
               819-938, gnl|monDom2|scaffold_44 (2422981-2422837)
               

               
               819-938, gnl|oryCun1|scaffold_211503 (5274-5129)
               

               
               819-938, gnl|panTro1|chr1_random (17665500-17665352)
               

               
               819-938, gnl|rheMac2|chr1 (126180609-126180439)
               

               
               819-938, gnl|rn3|chr2 (191340508-191340653)
               


               
               1013-1126, gnl|bosTau2|chr3 (15348211-15348098)
               

               
               1013-1126, gnl|Mm7|chr3 (96452440-96451963)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               fat (0.147427)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               pla (0.133672)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (0.147427)
               

               
               csk (0.140746)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               pla (0.133672)

	1-327, gnl\|bosTau2\|chr3 (15392843-15392509)
	1-327, gnl\|Hg17\|chr1 (142959706-142959364)

	493-634, gnl\|bosTau2\|chr3 (15351574-15351431)
	493-634, gnl\|Hg17\|chr1 (142948825-142948670)
	493-634, gnl\|Mm7\|chr3 (96455723-96455568)

	819-938, gnl\|bosTau2\|chr3 (15349520-15349401)
	819-938, gnl\|canFam2\|chr17 (61843970-61843800)
	819-938, gnl\|dasNov1\|scaffold_4243 (31948-32118)
	819-938, gnl\|hg17\|chr1 (142945978-142946126)
	819-938, gnl\|Hg17\|chr1 (142946150-142946031)
	819-938, gnl\|mm7\|chr3 (96453703-96453839)
	819-938, gnl\|Mm7\|chr3 (96453863-96453744)
	819-938, gnl\|monDom2\|scaffold_44 (2422981-2422837)
	819-938, gnl\|oryCun1\|scaffold_211503 (5274-5129)
	819-938, gnl\|panTro1\|chr1_random (17665500-17665352)
	819-938, gnl\|rheMac2\|chr1 (126180609-126180439)
	819-938, gnl\|rn3\|chr2 (191340508-191340653)

	1013-1126, gnl\|bosTau2\|chr3 (15348211-15348098)
	1013-1126, gnl\|Mm7\|chr3 (96452440-96451963)

	fat (0.147427)
	csk (0.140746)
	nca (0.136874)
	che (0.136314)
	pla (0.133672)