Ss1.1-Pig4-TMW8061H17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCTCGGGCCCCGCCGGCCGAGTGCTGACCGGCGGCGCTAGGACCCTGTGGGGGGAGTGG CGGGGGCGGAGGAGGCGGCACCAGGACCCGGGGGAACCGCGGCGGGCGGGCGACGAGCAG GCCCGGGGGCCGGGAGGCTGCGGGCGGCGGCGCTGGGCCCGGCGCGGCGAGAGAGGCCCC GAGATGCCGAGCAAGAAGAAGAAGTACAACGCGCGGTTCCCGCCGGCACGCATCAAGAAG ATAATGCAGACGGATGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCTCT CGGGCGCTCGAGCTTTTCCTGGAGTCACTGCTGAAGAAGGCCTGCCAAGTGACCCAGTCT AGAAATGCCAAGACCATGACCACATCCCACCTGAAGCAGTGCATTGAGCTGGAGCAGCAG TTTGACTTCTTAAAGGATCTGGTGGCCTCTGTGCCTGACATGCAGGGAGATGGGGAAGAC AACCACATGGACGGGGACAAGGGTCCTCGCAGGGGCCGGAAGCCAGGCGGCGGCAGCCGG AAGAACGGTGGCATGGGAAGCAAAGGCAAGGACAAGAAGCTGTCGGGGACAGACTCGGAG CAGGAGGATGAGTCTGAGGATACAGATACTGATGGGGAAGAGGAGACATCACAGGCCCCA TCCCAGGCCAGCCAGCCCCCTGCCCACTTTCAGAGCCCCCCGACACCCTTCACGCCCTTC ACCTCGACTCTGCCTCTGCCCCCAGCGCCCCAGGTCCCCGCAGCACCTGACGCAGAGGAC GAAGAAGATTATGACTCCTAGCGCCCTCTGCCCCCCAGGCCACACCCCCTTTTAGCTGCT CTGGGGGGAAGAGGGTAGAGCTGTTCTTAAATTTATTAAAAAAAAAAATAAAAGGGAATT CCAGTAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCTCGGGCCCCGCCGGCCGAGTGCTGACCGGCGGCGCTAGGACCCTGTGGGGGGAGTGG CGGGGGCGGAGGAGGCGGCACCAGGACCCGGGGGAACCGCGGCGGGCGGGCGACGAGCAG GCCCGGGGGCCGGGAGGCTGCGGGCGGCGGCGCTGGGCCCGGCGCGGCGAGAGAGGCCCC GAGATGCCGAGCAAGAAGAAGAAGTACAACGCGCGGTTCCCGCCGGCACGCATCAAGAAG ATAATGCAGACGGATGAAGAGATTGGGAAGGTGGCGGCAGCTGTGCCTGTCATCATCTCT CGGGCGCTCGAGCTTTTCCTGGAGTCACTGCTGAAGAAGGCCTGCCAAGTGACCCAGTCT AGAAATGCCAAGACCATGACCACATCCCACCTGAAGCAGTGCATTGAGCTGGAGCAGCAG TTTGACTTCTTAAAGGATCTGGTGGCCTCTGTGCCTGACATGCAGGGAGATGGGGAAGAC AACCACATGGACGGGGACAAGGGTCCTCGCAGGGGCCGGAAGCCAGGCGGCGGCAGCCGG AAGAACGGTGGCATGGGAAGCAAAGGCAAGGACAAGAAGCTGTCGGGGACAGACTCGGAG CAGGAGGATGAGTCTGAGGATACAGATACTGATGGGGAAGAGGAGACATCACAGGCCCCA TCCCAGGCCAGCCAGCCCCCTGCCCACTTTCAGAGCCCCCCGACACCCTTCACGCCCTTC ACCTCGACTCTGCCTCTGCCCCCAGCGCCCCAGGTCCCCGCAGCACCTGACGCAGAGGAC GAAGAAGATTATGACTCCTAGCGCCCTCTGCCCCCCAGGCCACACCCCCTTTTAGCTGCT CTGGGGGGAAGAGGGTAGAGCTGTTCTTAAATTTATTAAAAAAAAAAATAAAAGGGAATT CCAGTAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 3-226, gnl|bosTau2|chr29 (30527463-30527684) | |
| 3-226, gnl|Hg17|chr11 (65443370-65443591) | |
| 3-226, gnl|Mm7|chr19 (5319709-5319478) | |
| 380-527, gnl|bosTau2|chr29 (30528464-30528609) | |
| 380-527, gnl|canFam2|chr18 (54377386-54377285) | |
| 380-527, gnl|fr1|chrUn (283974790-283974704) | |
| 380-527, gnl|hg17|chr11 (65444373-65444474) | |
| 380-527, gnl|Hg17|chr11 (65444377-65444520) | |
| 380-527, gnl|loxAfr1|scaffold_89591 (7278-7375) | |
| 380-527, gnl|mm7|chr19 (5318714-5318615) | |
| 380-527, gnl|Mm7|chr19 (5318709-5318565) | |
| 380-527, gnl|monDom2|scaffold_107 (1767293-1767203) | |
| 380-527, gnl|oryCun1|scaffold_191598 (106-6) | |
| 380-527, gnl|panTro1|chr9 (66690933-66691034) | |
| 380-527, gnl|rheMac2|chr14 (8530612-8530511) | |
| 380-527, gnl|rn3|chr1 (208223017-208222918) | |
| 380-527, gnl|tetNig1|chr11 (1093484-1093398) | |
| 380-527, gnl|xenTro1|scaffold_41 (1593988-1594089) | |
| 601-887, gnl|bosTau2|chr14 (31397549-31397858) | |
| 601-887, gnl|Hg17|chr11 (65444928-65445582) | |
| 601-887, gnl|Mm7|chr19 (5318228-5317622) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-226, gnl|bosTau2|chr29 (30527463-30527684) | |
| 3-226, gnl|Hg17|chr11 (65443370-65443591) | |
| 3-226, gnl|Mm7|chr19 (5319709-5319478) | |
| 380-527, gnl|bosTau2|chr29 (30528464-30528609) | |
| 380-527, gnl|canFam2|chr18 (54377386-54377285) | |
| 380-527, gnl|fr1|chrUn (283974790-283974704) | |
| 380-527, gnl|hg17|chr11 (65444373-65444474) | |
| 380-527, gnl|Hg17|chr11 (65444377-65444520) | |
| 380-527, gnl|loxAfr1|scaffold_89591 (7278-7375) | |
| 380-527, gnl|mm7|chr19 (5318714-5318615) | |
| 380-527, gnl|Mm7|chr19 (5318709-5318565) | |
| 380-527, gnl|monDom2|scaffold_107 (1767293-1767203) | |
| 380-527, gnl|oryCun1|scaffold_191598 (106-6) | |
| 380-527, gnl|panTro1|chr9 (66690933-66691034) | |
| 380-527, gnl|rheMac2|chr14 (8530612-8530511) | |
| 380-527, gnl|rn3|chr1 (208223017-208222918) | |
| 380-527, gnl|tetNig1|chr11 (1093484-1093398) | |
| 380-527, gnl|xenTro1|scaffold_41 (1593988-1594089) | |
| 601-887, gnl|bosTau2|chr14 (31397549-31397858) | |
| 601-887, gnl|Hg17|chr11 (65444928-65445582) | |
| 601-887, gnl|Mm7|chr19 (5318228-5317622) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| duo (0.518403) | |
| nep (0.36785) | |
| ill (0.351185) | |
| hlv (0.278513) | |
| nca (0.273748) | |
| fce (0.271592) | |
| cov (0.264306) | |
| eru (0.240096) | |
| ece (0.229305) | |
| mas (0.210305) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| cst (0.140036) | |
| ste (0.135208) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.518403) | |
| nep (0.36785) | |
| ill (0.351185) | |
| hlv (0.278513) | |
| nca (0.273748) | |
| fce (0.271592) | |
| cov (0.264306) | |
| eru (0.240096) | |
| ece (0.229305) | |
| mas (0.210305) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| cst (0.140036) | |
| ste (0.135208) | |
| eep (0.122564) | |
| cly (0.120642) | |
| med (0.116252) | |
| nbm (0.0993246) | |
| eje (0.0988338) | |
| ldo (0.0970026) |