Non-Coding RNA Search

Ss1.1-Pig4-TMW8061H19.3

Sequence:


               
               GCCTGACCCTACCTGGGCACCCGGTGAATTTCCAGTGTTTACCCGAAGAAGTTGGGGATA
CCGGGGGCACTGTGACAGACCTCCGGCCGTGGTCTAGGCCAGAAGGAGATCCCCTCGACC
GTTCAGGGCTGAAATGGACCCACTCAGGGCCCAGCAGCTGGCAGCAGAGCTGGAGGTAGA
GATGATGGCTGATATGTACAACAGAATGACCAGTGCCTGCCACCGGAAGTGCGTGCCTCC
CCACTACAAGGAAGCAGAACTGTCCAAGGGCGAGTCTGTGTGCTTGGACCGGTGCGTCTC
CAAATACCTGGACATCCATGAGCGGATGGGCAAAAAGCTCACAGAGTTATCTATGCAGGA
CGAAGAGCTGATGAAGAGGGTGCAGCAGAGCTCTGGGCCTGCGTGAGGCCCTAGACAGTA
CACCCCAAGGTGCACCCTGCCCCCTCCCACTTGTCTAATAAACGTGCCCCTGTTGGGTGT
CATCTGGGAAGACGGCCGGGTCTAAGCTCTTTCTGGAGAGTCTCCAGGTGCCTGGAGTAT
GATAGAGCTCTTTCCTGGTCAAAGAAGGGATATTTGTCACACTGGAATGTGACCGTATAC
GTGTGTGTGTGTGTGTATATACATATATATGTTATGTATTAAAACAAGTTTGTTGACTCC
TGCAGTGTGCAAAGCAGTGTGCCTGACGCTTTACTTGGGAGTAAAGGCAATGGTCACAGA
CTCTACCAGCAGAGGGGGTCTGATGTGTTTAAAAACATAGGCTGGTTCTGTGGCTTAAGT
TTACACCCCACGTCAGCCACTTGCTGTGTGACCCTGAACATGCAGTTAACTTCTACATCT
GTAAACTGGGGACAAATATAAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGACCCTACCTGGGCACCCGGTGAATTTCCAGTGTTTACCCGAAGAAGTTGGGGATA
CCGGGGGCACTGTGACAGACCTCCGGCCGTGGTCTAGGCCAGAAGGAGATCCCCTCGACC
GTTCAGGGCTGAAATGGACCCACTCAGGGCCCAGCAGCTGGCAGCAGAGCTGGAGGTAGA
GATGATGGCTGATATGTACAACAGAATGACCAGTGCCTGCCACCGGAAGTGCGTGCCTCC
CCACTACAAGGAAGCAGAACTGTCCAAGGGCGAGTCTGTGTGCTTGGACCGGTGCGTCTC
CAAATACCTGGACATCCATGAGCGGATGGGCAAAAAGCTCACAGAGTTATCTATGCAGGA
CGAAGAGCTGATGAAGAGGGTGCAGCAGAGCTCTGGGCCTGCGTGAGGCCCTAGACAGTA
CACCCCAAGGTGCACCCTGCCCCCTCCCACTTGTCTAATAAACGTGCCCCTGTTGGGTGT
CATCTGGGAAGACGGCCGGGTCTAAGCTCTTTCTGGAGAGTCTCCAGGTGCCTGGAGTAT
GATAGAGCTCTTTCCTGGTCAAAGAAGGGATATTTGTCACACTGGAATGTGACCGTATAC
GTGTGTGTGTGTGTGTATATACATATATATGTTATGTATTAAAACAAGTTTGTTGACTCC
TGCAGTGTGCAAAGCAGTGTGCCTGACGCTTTACTTGGGAGTAAAGGCAATGGTCACAGA
CTCTACCAGCAGAGGGGGTCTGATGTGTTTAAAAACATAGGCTGGTTCTGTGGCTTAAGT
TTACACCCCACGTCAGCCACTTGCTGTGTGACCCTGAACATGCAGTTAACTTCTACATCT
GTAAACTGGGGACAAATATAAGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21618669|gb|AAH31448.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21618669|gb|AAH31448.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               329-660, - strand, RNAz p=0.999942

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               329-660, - strand, RNAz p=0.999942

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               96-660, gnl|bosTau2|chr9 (42448020-42448578)
               

               
               96-660, gnl|Hg17|chr11 (57054276-57052515)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-660, gnl|bosTau2|chr9 (42448020-42448578)
               

               
               96-660, gnl|Hg17|chr11 (57054276-57052515)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               nms (0.427716)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               cmu (0.186393)
               

               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               hyp (0.285673)
               

               
               lnt (0.284616)
               

               
               fce (0.271592)
               

               
               cmu (0.186393)
               

               
               ill (0.175593)
               

               
               csp (0.161186)
               

               
               pty (0.142714)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	96-660, gnl\|bosTau2\|chr9 (42448020-42448578)
	96-660, gnl\|Hg17\|chr11 (57054276-57052515)

	nms (0.427716)
	hyp (0.285673)
	lnt (0.284616)
	fce (0.271592)
	cmu (0.186393)
	ill (0.175593)
	csp (0.161186)
	pty (0.142714)
	eru (0.120048)
	pgl (0.118483)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)