Non-Coding RNA Search

Ss1.1-Pig4-TMW8061H20.3

Sequence:


               
               GACCCTGAAAACTGTGTGGCAAAGGAGAAGCCCTACCTCCTTGTACTGTGTTGAAACATG
CAAGCTTTTCCTTTTCCTTTCCTTTCCCTTTGAATGTTTTCTTGACCCAAAACAAAAGTT
GGGAATCTTGGAACCTCACCCACAACTCGTGCTCACTGGCTCCTTTGTAGACTTCTGGAG
TCTTCCACAAGGCTTGATGGTCTTGCCCTCAGTCTGGAGAAGCTCCCCAGAACCTGTCTC
AAAGCACTCCACCTGGCTCAGAGGATACCCAGGCCCAGTCCATGAGGTGGGCCGACCTCC
AGGAATAGAAGGCAGCAGGCAGGAGCCTCTCTGTTCTCTTCCCTAGATCCAGAGGAGAAG
AGGTAGAGGGAACTGACGGGTCTCCATGGCATCATGGCAGTCGCCCACTCCACACTGCCC
TGCCTCTCCCTGCCACCCCTTCTCAGGGAAGAGAATCCTGTCATGGCCAGTGTGTCACCA
GGTCCTTAATGCCCTGAGCTCTCTGAGCTAGTGACCTGGCTCTACTGCCCATTTCCTACC
TTAATTTGTTCTCAATTCCCTGGGGAATGTGACAGATGGAGACAGGCAGACAAACCCAGG
ATGGGCAACATCTAGGCCATGTCCAAGGTTGGCCAAAGTAAAGAGACTCTGGGCCTCCCA
GCAGGGCAGGAACTTGAGCAGTGGTTCCAAGTCTAGCTCTGGGCCCCTGGTCTATGTCTT
TTTTTCCTTGTGGCTTTTTAAAACTTTGCAGTTGTTTCAAGAAATCCAGTCTTTTAAACC
AGCCCTTTTGTTAAACTTTAAATTTTTCTTTATTGATTTGTTTAGAAGTGAAAAAACCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACCCTGAAAACTGTGTGGCAAAGGAGAAGCCCTACCTCCTTGTACTGTGTTGAAACATG
CAAGCTTTTCCTTTTCCTTTCCTTTCCCTTTGAATGTTTTCTTGACCCAAAACAAAAGTT
GGGAATCTTGGAACCTCACCCACAACTCGTGCTCACTGGCTCCTTTGTAGACTTCTGGAG
TCTTCCACAAGGCTTGATGGTCTTGCCCTCAGTCTGGAGAAGCTCCCCAGAACCTGTCTC
AAAGCACTCCACCTGGCTCAGAGGATACCCAGGCCCAGTCCATGAGGTGGGCCGACCTCC
AGGAATAGAAGGCAGCAGGCAGGAGCCTCTCTGTTCTCTTCCCTAGATCCAGAGGAGAAG
AGGTAGAGGGAACTGACGGGTCTCCATGGCATCATGGCAGTCGCCCACTCCACACTGCCC
TGCCTCTCCCTGCCACCCCTTCTCAGGGAAGAGAATCCTGTCATGGCCAGTGTGTCACCA
GGTCCTTAATGCCCTGAGCTCTCTGAGCTAGTGACCTGGCTCTACTGCCCATTTCCTACC
TTAATTTGTTCTCAATTCCCTGGGGAATGTGACAGATGGAGACAGGCAGACAAACCCAGG
ATGGGCAACATCTAGGCCATGTCCAAGGTTGGCCAAAGTAAAGAGACTCTGGGCCTCCCA
GCAGGGCAGGAACTTGAGCAGTGGTTCCAAGTCTAGCTCTGGGCCCCTGGTCTATGTCTT
TTTTTCCTTGTGGCTTTTTAAAACTTTGCAGTTGTTTCAAGAAATCCAGTCTTTTAAACC
AGCCCTTTTGTTAAACTTTAAATTTTTCTTTATTGATTTGTTTAGAAGTGAAAAAACCAC

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               1-315, gnl|bosTau2|chr11 (72846478-72846162)
               

               
               1-315, gnl|Hg17|chr9 (124361422-124361104)
               

               
               1-315, gnl|Mm7|chr2 (38732512-38732221)
               


               
               345-836, gnl|bosTau2|chr11 (72846163-72845675)
               

               
               345-836, gnl|Hg17|chr9 (124361105-124360596)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-315, gnl|bosTau2|chr11 (72846478-72846162)
               

               
               1-315, gnl|Hg17|chr9 (124361422-124361104)
               

               
               1-315, gnl|Mm7|chr2 (38732512-38732221)
               


               
               345-836, gnl|bosTau2|chr11 (72846163-72845675)
               

               
               345-836, gnl|Hg17|chr9 (124361105-124360596)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               duo (0.172801)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               ecc (0.115035)

	1-315, gnl\|bosTau2\|chr11 (72846478-72846162)
	1-315, gnl\|Hg17\|chr9 (124361422-124361104)
	1-315, gnl\|Mm7\|chr2 (38732512-38732221)

	345-836, gnl\|bosTau2\|chr11 (72846163-72845675)
	345-836, gnl\|Hg17\|chr9 (124361105-124360596)