Ss1.1-Pig4-TMW8061I17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAACTTTTTCTCCCTCCCGGAGAAGGCTGAGCCACCTGGAGTTGAGCCATACCCTTATCC CATTCCCACTGTCCCTGAGGAGCTGCCTCCAGGCACGGAACCAGAGCCGGCCTTCCAGGA CGATGCAGCCAATGCCCCCCTAGAATTCAAGATGGCAGCAGGTTCAAGTGGGGCCCCTTG GATGCCCAAGCCTGGGGACGACTACAGCTACAATCAGTTTTCCACATATGGCGATGCCAA TGCCGCTGGTGCTTATTATCAGGATTATTACAGTGGTGGCTACTATCCCGCACAGGACCC GGCTCTGGTCCCCCCCCAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAAGCATT TAAGCGGCTGCAGGGCAAAAGGAACCGAGGGAGGGAGGAGATCAACTTCGTGGAGATCAA AGGTGACGACCAGCTCAGTGGGGCCCAGCAGTGGATGACCAAGTCGTTGACAGAAGAGAA AACCATGAAGTCATTCAGCAAAAAGAAAGGTGAGCAGCCAACAGGCCAGCAGCGGCGGAA ACACCAGATCACATACCTGATTCATCAGGCTAAGGAGCGGGAGCTGGAACTGAAGAACAC CTGGTCAGAGAACAAGCTCAGCCGCCGGCAAACCCAAGCCAAATACGGATTCTAGGGCTC TGGACCTGACTGCGCCCCCGGGATCTCCTGCACCCCAGCTGGCCCAGCCTCCAGCTTCAT CTCTGGGATCCCAGCTGCTCCAAGCCCAGGATCTCTTTCCCTGAGGACCCAGCCCTCGCC TCTGCGAGAATGAACATATTTGATAGATTTTTTTTCTTAACAAAAAAAGTTAGAAAATTC AGCTCCTTTCTGTCTCGGAGCTAGCAAAGACTCAAGTGATGCCTCAGAAGGGGCTCTGAG TTCTTGGATGGGAGTTTTGCTCCCTGTTGGGTGTGATGAAATGTTGGACTCCTCCCTCCA TCTTTTTTTTCTTTTTTTTTTTTTTTTAAAACCAGGGATGTCTGTTGAAATAAAACGTTC AGTCTGACAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAACTTTTTCTCCCTCCCGGAGAAGGCTGAGCCACCTGGAGTTGAGCCATACCCTTATCC CATTCCCACTGTCCCTGAGGAGCTGCCTCCAGGCACGGAACCAGAGCCGGCCTTCCAGGA CGATGCAGCCAATGCCCCCCTAGAATTCAAGATGGCAGCAGGTTCAAGTGGGGCCCCTTG GATGCCCAAGCCTGGGGACGACTACAGCTACAATCAGTTTTCCACATATGGCGATGCCAA TGCCGCTGGTGCTTATTATCAGGATTATTACAGTGGTGGCTACTATCCCGCACAGGACCC GGCTCTGGTCCCCCCCCAGGAAATTGCCCCAGATGCCTCCTTCATCGATGACGAAGCATT TAAGCGGCTGCAGGGCAAAAGGAACCGAGGGAGGGAGGAGATCAACTTCGTGGAGATCAA AGGTGACGACCAGCTCAGTGGGGCCCAGCAGTGGATGACCAAGTCGTTGACAGAAGAGAA AACCATGAAGTCATTCAGCAAAAAGAAAGGTGAGCAGCCAACAGGCCAGCAGCGGCGGAA ACACCAGATCACATACCTGATTCATCAGGCTAAGGAGCGGGAGCTGGAACTGAAGAACAC CTGGTCAGAGAACAAGCTCAGCCGCCGGCAAACCCAAGCCAAATACGGATTCTAGGGCTC TGGACCTGACTGCGCCCCCGGGATCTCCTGCACCCCAGCTGGCCCAGCCTCCAGCTTCAT CTCTGGGATCCCAGCTGCTCCAAGCCCAGGATCTCTTTCCCTGAGGACCCAGCCCTCGCC TCTGCGAGAATGAACATATTTGATAGATTTTTTTTCTTAACAAAAAAAGTTAGAAAATTC AGCTCCTTTCTGTCTCGGAGCTAGCAAAGACTCAAGTGATGCCTCAGAAGGGGCTCTGAG TTCTTGGATGGGAGTTTTGCTCCCTGTTGGGTGTGATGAAATGTTGGACTCCTCCCTCCA TCTTTTTTTTCTTTTTTTTTTTTTTTTAAAACCAGGGATGTCTGTTGAAATAAAACGTTC AGTCTGACAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 359-477, + strand, RNAz p=0.796471 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 359-477, + strand, RNAz p=0.796471 |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-263, gnl|bosTau2|chr3 (9814522-9814784) | |
| 1-263, gnl|Hg17|chr1 (153569778-153570040) | |
| 1-263, gnl|Mm7|chr3 (87983645-87983383) | |
| 359-502, gnl|bosTau2|chr3 (9818712-9818855) | |
| 359-502, gnl|canFam2|chr7 (44174520-44174351) | |
| 359-502, gnl|danRer3|chr19 (2155089-2155239) | |
| 359-502, gnl|dasNov1|scaffold_260804 (648-500) | |
| 359-502, gnl|echTel1|scaffold_190277 (5153-4984) | |
| 359-502, gnl|fr1|chrUn (220585135-220584967) | |
| 359-502, gnl|galGal2|chrUn (121777841-121778009) | |
| 359-502, gnl|hg17|chr1 (153577531-153577701) | |
| 359-502, gnl|Hg17|chr1 (153577530-153577673) | |
| 359-502, gnl|loxAfr1|scaffold_79823 (10565-10374) | |
| 359-502, gnl|mm7|chr3 (87976076-87975906) | |
| 359-502, gnl|Mm7|chr3 (87976075-87975932) | |
| 359-502, gnl|monDom2|scaffold_59 (523660-523502) | |
| 359-502, gnl|oryCun1|scaffold_199691 (81449-81622) | |
| 359-502, gnl|panTro1|chr1 (135542244-135542414) | |
| 359-502, gnl|rheMac2|chr1 (135405613-135405783) | |
| 359-502, gnl|rn3|chr2 (179885741-179885571) | |
| 359-502, gnl|tetNig1|chr21_random (1859827-1859977) | |
| 359-502, gnl|xenTro1|scaffold_477 (467125-467274) | |
| 566-673, gnl|bosTau2|chr3 (9822551-9822658) | |
| 566-673, gnl|canFam2|chr7 (44169810-44169677) | |
| 566-673, gnl|danRer3|chr19 (2155803-2155924) | |
| 566-673, gnl|dasNov1|scaffold_112467 (2108-2240) | |
| 566-673, gnl|echTel1|scaffold_276739 (48684-48792) | |
| 566-673, gnl|fr1|chrUn (220584712-220584593) | |
| 566-673, gnl|galGal2|chrUn (121778831-121778991) | |
| 566-673, gnl|hg17|chr1 (153583220-153583355) | |
| 566-673, gnl|Hg17|chr1 (153583236-153583343) | |
| 566-673, gnl|mm7|chr3 (87973168-87973035) | |
| 566-673, gnl|Mm7|chr3 (87973150-87973043) | |
| 566-673, gnl|monDom2|scaffold_59 (518937-518797) | |
| 566-673, gnl|oryCun1|scaffold_199691 (85794-85928) | |
| 566-673, gnl|panTro1|chr1 (135547918-135548053) | |
| 566-673, gnl|rheMac2|chr1 (135409338-135409473) | |
| 566-673, gnl|rn3|chr2 (179882518-179882386) | |
| 566-673, gnl|tetNig1|chr21_random (1860340-1860444) | |
| 566-673, gnl|xenTro1|scaffold_477 (468111-468236) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-263, gnl|bosTau2|chr3 (9814522-9814784) | |
| 1-263, gnl|Hg17|chr1 (153569778-153570040) | |
| 1-263, gnl|Mm7|chr3 (87983645-87983383) | |
| 359-502, gnl|bosTau2|chr3 (9818712-9818855) | |
| 359-502, gnl|canFam2|chr7 (44174520-44174351) | |
| 359-502, gnl|danRer3|chr19 (2155089-2155239) | |
| 359-502, gnl|dasNov1|scaffold_260804 (648-500) | |
| 359-502, gnl|echTel1|scaffold_190277 (5153-4984) | |
| 359-502, gnl|fr1|chrUn (220585135-220584967) | |
| 359-502, gnl|galGal2|chrUn (121777841-121778009) | |
| 359-502, gnl|hg17|chr1 (153577531-153577701) | |
| 359-502, gnl|Hg17|chr1 (153577530-153577673) | |
| 359-502, gnl|loxAfr1|scaffold_79823 (10565-10374) | |
| 359-502, gnl|mm7|chr3 (87976076-87975906) | |
| 359-502, gnl|Mm7|chr3 (87976075-87975932) | |
| 359-502, gnl|monDom2|scaffold_59 (523660-523502) | |
| 359-502, gnl|oryCun1|scaffold_199691 (81449-81622) | |
| 359-502, gnl|panTro1|chr1 (135542244-135542414) | |
| 359-502, gnl|rheMac2|chr1 (135405613-135405783) | |
| 359-502, gnl|rn3|chr2 (179885741-179885571) | |
| 359-502, gnl|tetNig1|chr21_random (1859827-1859977) | |
| 359-502, gnl|xenTro1|scaffold_477 (467125-467274) | |
| 566-673, gnl|bosTau2|chr3 (9822551-9822658) | |
| 566-673, gnl|canFam2|chr7 (44169810-44169677) | |
| 566-673, gnl|danRer3|chr19 (2155803-2155924) | |
| 566-673, gnl|dasNov1|scaffold_112467 (2108-2240) | |
| 566-673, gnl|echTel1|scaffold_276739 (48684-48792) | |
| 566-673, gnl|fr1|chrUn (220584712-220584593) | |
| 566-673, gnl|galGal2|chrUn (121778831-121778991) | |
| 566-673, gnl|hg17|chr1 (153583220-153583355) | |
| 566-673, gnl|Hg17|chr1 (153583236-153583343) | |
| 566-673, gnl|mm7|chr3 (87973168-87973035) | |
| 566-673, gnl|Mm7|chr3 (87973150-87973043) | |
| 566-673, gnl|monDom2|scaffold_59 (518937-518797) | |
| 566-673, gnl|oryCun1|scaffold_199691 (85794-85928) | |
| 566-673, gnl|panTro1|chr1 (135547918-135548053) | |
| 566-673, gnl|rheMac2|chr1 (135409338-135409473) | |
| 566-673, gnl|rn3|chr2 (179882518-179882386) | |
| 566-673, gnl|tetNig1|chr21_random (1860340-1860444) | |
| 566-673, gnl|xenTro1|scaffold_477 (468111-468236) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| cli (0.305623) | |
| nbm (0.198649) | |
| col (0.195008) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| ldo (0.0970026) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.305623) | |
| nbm (0.198649) | |
| col (0.195008) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| med (0.116252) | |
| jca (0.11396) | |
| spc (0.113366) | |
| ldo (0.0970026) |