Non-Coding RNA Search

Ss1.1-Pig4-TMW8061I19.5

Sequence:


               
               AAGAGAAGCATGAGCAAGGAGCATTGCCCTGGGACAAGCAGCTGTGTCACATTCACATTT
AATGAATTCTGTGACAGGAATGAGATCCGGGTGAGAAATGGGGAGACAAACTATTCTACA
ATTCATAGCTTACTGTGGTAGATGAAAGATTAATTAGGGTTCCGGTGTTGAGGGAATCTC
CTAATTCCTAAGTCTTAGGAATCGGGGGGAGATGGAATCTCAACTATGTTGCCTCAGCAG
ACGGAAAGACAGAAGAAACACCGGTCTAGAGCAACACCTCAGGATCTACGATGGTTTAGG
AAGTATGCTGTAGTGTTTTTTAACAAATGAGAGATTACTCTCTTCAGTCTATCTATGTAT
ATTCTTATGGGAAAAGCACTGGTGGTGGTATCAACAGATATGAATTCTGCTTCCAGATGT
CTTATGTGTAAGTCAACCTGCCTCCATTTCCCTTTCTGTAAAGCAGAAAAATGTTTACAC
CTTAATCTGCTTCTCAGGGATACCATGTTAATAAAAATTATATCTATATAGTGGTAAAAA
TTCCTTCCAGGTATTTTTCTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGAAGCATGAGCAAGGAGCATTGCCCTGGGACAAGCAGCTGTGTCACATTCACATTT
AATGAATTCTGTGACAGGAATGAGATCCGGGTGAGAAATGGGGAGACAAACTATTCTACA
ATTCATAGCTTACTGTGGTAGATGAAAGATTAATTAGGGTTCCGGTGTTGAGGGAATCTC
CTAATTCCTAAGTCTTAGGAATCGGGGGGAGATGGAATCTCAACTATGTTGCCTCAGCAG
ACGGAAAGACAGAAGAAACACCGGTCTAGAGCAACACCTCAGGATCTACGATGGTTTAGG
AAGTATGCTGTAGTGTTTTTTAACAAATGAGAGATTACTCTCTTCAGTCTATCTATGTAT
ATTCTTATGGGAAAAGCACTGGTGGTGGTATCAACAGATATGAATTCTGCTTCCAGATGT
CTTATGTGTAAGTCAACCTGCCTCCATTTCCCTTTCTGTAAAGCAGAAAAATGTTTACAC
CTTAATCTGCTTCTCAGGGATACCATGTTAATAAAAATTATATCTATATAGTGGTAAAAA
TTCCTTCCAGGTATTTTTCTTTTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               147-260, - strand, RNAz p=0.888693
               

               
               385-504, - strand, RNAz p=0.718336

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               147-260, - strand, RNAz p=0.888693
               

               
               385-504, - strand, RNAz p=0.718336

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               4-522, gnl|bosTau2|chr21 (34220741-34220220)
               

               
               4-522, gnl|Hg17|chr15 (41438177-41437667)
               

               
               4-522, gnl|Mm7|chr2 (120899654-120899142)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-522, gnl|bosTau2|chr21 (34220741-34220220)
               

               
               4-522, gnl|Hg17|chr15 (41438177-41437667)
               

               
               4-522, gnl|Mm7|chr2 (120899654-120899142)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               nco (0.161734)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               spc (0.113366)

	147-260, - strand, RNAz p=0.888693
	385-504, - strand, RNAz p=0.718336

	4-522, gnl\|bosTau2\|chr21 (34220741-34220220)
	4-522, gnl\|Hg17\|chr15 (41438177-41437667)
	4-522, gnl\|Mm7\|chr2 (120899654-120899142)