Non-Coding RNA Search

Ss1.1-Pig4-TMW8061J06.3

Sequence:


               
               CACAACTGTCTCTAAAATACTGAGAAAAATTAATGAAACACATCTTAGGATTTTCAGCTT
TTCTACATTTTTTTAAATGATCAGCTTTAAAAAGAAGGTTAATTAAAAAAAATCATTCAG
AATAGATGATCTAATGTATATGGATATAGGAACATTATCCTAGGTCATCCACGAATCAGT
CATACATGTATTTTGGTGTGTGTGTCTGAAATATAATACAAATTAGCAAAGCACATAGCA
TTACATACTTGAGGTATTGGTGCATAAGGAGGGAAAAAAACTTTCTGCAAAACCAAGGAC
TGTGTTGCATAATGAGACAGCTGTGATTTTATTTTAAACTGTGAAATCATGTGCCACAAC
AAAATTCAGAGAATTTGTCTTTTTCTTAGATTCAAAAGGTGCAGAAAGAAATCAAATTAT
ACTTTTAAGTTAGTGGTGCTTTAAGCAGAAGTTTTTCTACATTAACCAGTATTAAAATCT
CAAGCAAGGTATTTCGAGTGCCAGGATATATTAGGTAGAATTTATAAGTGAGGTGGCATC
CCTGTATTATGTGTCACAGAGTTGCAAAGTAAACACTACAAGTAATCATTCTGCACTCAA
CAGTGCCTAGCAGGGCAGGAAGGGCTGGAGGTGGAAAGGAAAGTCCTCAAGGGCAGATAG
AGCGAGGCCCCAGATCACAATCTGCCAGGGCACACCCATACTAAGAGACAATGCAGACAG
CTTGATAGACCCAGAACTTTCACTGAGCTAGATAGAGACCCAGAACTTTCATTGAGCTGG
TATCTGAGCTATGAAATAGCTGCTTTGGTGTACCTCTTTGCCTGAAATTGCTTTTAGTTT
CAAGACTGTAGAATGATCCTTTTAAATTGTAATCTTTTCTAATAGAAATATTTTAACATA
CTTGCTTTTTTTTAAAAAAAACAAAAACTACTGTCAGTATTAATACTGAGCCAGACTGGC
ATCTACAGATTTAAGATTTATCATTTCATTAAGGTTTTTACCCCTGTACTAAAAACTAGC
CAATATCATGGCCTTTGGATACATATGAGAAGACACAGTTACTATCATTCCATAGGCCTT
CCATTTGTCTGTACATCCGTCATCATTTGAGGGCCTAGTACATGCCAGGCAACTCACATG
CTAGGCACTGGGGTATAAAAAAAGACTGTCCTTAACCTCAGTAAGTATTCAAATTGTTGT
ATTACCCATTAGGTTTACTGTATTTCATTTTTAATATCATAAGTACATGTCTAAAAAATT
TCTACTTTAAGCACTATTGTTTTTCATAACTATATTTTATTAAAAATAAATTAAAAAGAT
ATATGCATGTATGTGTTACTAATGATTAAAACTATGGTTCCAATTACCGAAATGTCTGCC
TTTTAAATATAACACATACTATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACAACTGTCTCTAAAATACTGAGAAAAATTAATGAAACACATCTTAGGATTTTCAGCTT
TTCTACATTTTTTTAAATGATCAGCTTTAAAAAGAAGGTTAATTAAAAAAAATCATTCAG
AATAGATGATCTAATGTATATGGATATAGGAACATTATCCTAGGTCATCCACGAATCAGT
CATACATGTATTTTGGTGTGTGTGTCTGAAATATAATACAAATTAGCAAAGCACATAGCA
TTACATACTTGAGGTATTGGTGCATAAGGAGGGAAAAAAACTTTCTGCAAAACCAAGGAC
TGTGTTGCATAATGAGACAGCTGTGATTTTATTTTAAACTGTGAAATCATGTGCCACAAC
AAAATTCAGAGAATTTGTCTTTTTCTTAGATTCAAAAGGTGCAGAAAGAAATCAAATTAT
ACTTTTAAGTTAGTGGTGCTTTAAGCAGAAGTTTTTCTACATTAACCAGTATTAAAATCT
CAAGCAAGGTATTTCGAGTGCCAGGATATATTAGGTAGAATTTATAAGTGAGGTGGCATC
CCTGTATTATGTGTCACAGAGTTGCAAAGTAAACACTACAAGTAATCATTCTGCACTCAA
CAGTGCCTAGCAGGGCAGGAAGGGCTGGAGGTGGAAAGGAAAGTCCTCAAGGGCAGATAG
AGCGAGGCCCCAGATCACAATCTGCCAGGGCACACCCATACTAAGAGACAATGCAGACAG
CTTGATAGACCCAGAACTTTCACTGAGCTAGATAGAGACCCAGAACTTTCATTGAGCTGG
TATCTGAGCTATGAAATAGCTGCTTTGGTGTACCTCTTTGCCTGAAATTGCTTTTAGTTT
CAAGACTGTAGAATGATCCTTTTAAATTGTAATCTTTTCTAATAGAAATATTTTAACATA
CTTGCTTTTTTTTAAAAAAAACAAAAACTACTGTCAGTATTAATACTGAGCCAGACTGGC
ATCTACAGATTTAAGATTTATCATTTCATTAAGGTTTTTACCCCTGTACTAAAAACTAGC
CAATATCATGGCCTTTGGATACATATGAGAAGACACAGTTACTATCATTCCATAGGCCTT
CCATTTGTCTGTACATCCGTCATCATTTGAGGGCCTAGTACATGCCAGGCAACTCACATG
CTAGGCACTGGGGTATAAAAAAAGACTGTCCTTAACCTCAGTAAGTATTCAAATTGTTGT
ATTACCCATTAGGTTTACTGTATTTCATTTTTAATATCATAAGTACATGTCTAAAAAATT
TCTACTTTAAGCACTATTGTTTTTCATAACTATATTTTATTAAAAATAAATTAAAAAGAT
ATATGCATGTATGTGTTACTAATGATTAAAACTATGGTTCCAATTACCGAAATGTCTGCC
TTTTAAATATAACACATACTATTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               104-223, + strand, RNAz p=0.994036

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               104-223, + strand, RNAz p=0.994036

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-751, gnl|bosTau2|chr7 (24621157-24620406)
               

               
               1-751, gnl|Hg17|chr5 (121429379-121428687)
               

               
               1-751, gnl|Mm7|chr18 (52896361-52895623)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-751, gnl|bosTau2|chr7 (24621157-24620406)
               

               
               1-751, gnl|Hg17|chr5 (121429379-121428687)
               

               
               1-751, gnl|Mm7|chr18 (52896361-52895623)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               amn (0.835422)
               

               
               elu (0.385356)
               

               
               fat (0.294855)
               

               
               pla (0.267344)
               

               
               ese (0.253004)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               csk (0.140746)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.835422)
               

               
               elu (0.385356)
               

               
               fat (0.294855)
               

               
               pla (0.267344)
               

               
               ese (0.253004)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               csk (0.140746)
               

               
               tra (0.123092)
               

               
               spc (0.113366)

	1-751, gnl\|bosTau2\|chr7 (24621157-24620406)
	1-751, gnl\|Hg17\|chr5 (121429379-121428687)
	1-751, gnl\|Mm7\|chr18 (52896361-52895623)

	amn (0.835422)
	elu (0.385356)
	fat (0.294855)
	pla (0.267344)
	ese (0.253004)
	mgp (0.230681)
	aor (0.195274)
	cmu (0.186393)
	csk (0.140746)
	tra (0.123092)
	spc (0.113366)