Ss1.1-Pig4-TMW8061J12.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGCGCCCAAAAATGGCGAGCGAAGCTTCGGGGACGCGCTGAATAGCGGAGGCGAGCGTG CAAAGCCACTGCGGCCCTCACAGTTCGGAGCCCGGCCGGGCCCTGCCGCAGGGAACATGC ACTTTTCCATTCCTGAAACCGAGTCCCGCAGCGGGGACAGCGGCGGCTCCGCCTACGTGG CCTATAACATTCACGTGAATGGAGTCCTGCACTGTCGAGTGCGCTACAGTCAGCTCCTGG GGCTGCACGAGCAGCTTCGGAAGGAATATGGGGCCAATGTGCTTCCTGCATTCCCCCCAA AGAAGCTTTTCTCTCTGACCCCTGCTGAGGTAGAACAGAGAAGAGAGCAGTTAGAGAAGT ACATGCAAGCCGTGCGGCAAGACCCATTGCTTGGGAGCAGTGAGACCTTCAATAGTTTCC TGCGTCGAGCACAACAGGAGACACAGCAGGTACCCACAGAAGAGGTCTCCTTGGAAGTGC TACTCAGCAACGGGCAGAAAGTTCTGGTCAACGTGCTAACTTCAGATCAAACTGAGGATG TCCTGGAGGCTGTGGCTGCAAAGCTGGATCTTCCAGATGACTTGATCGGATACTTCAGTC TCTTTCTAGTTCGAGAAAAAGAGGATGGAGCCTTTTCATTTGTACGGAAGTTGCAAGAGT TTGAGCTGCCTTATGTGTCTGTTACCAGTCTTCGAAGTCAAGAGTATAAGATTGTGCTAA GGAAGAGTTATTGGGACTCTGCCTATGATGACGATGTCATGGAGAACCGGGTTGGCCTGA ACCTGCTTTATGCTCAGACGGTATCAGACATCGAGCGTGGGTGGATCCTGGTCACCAAGG AGCAGCACCGGCAGCTCAAATCTTTGCAGGAGAAGGTCTCCAAGAAGGAGTTCCTGCGGC TGGCGCAGACGCTGCGGCACTATGGCTACTTGCGCTTTGATGCCTGTGTGGCTGACTTCC CGGAGAAGGACTGTCCGGTGGTGGTGAGCGCAGGCAATAGTGAGCTCAGCCTCCAGCTCC GCCTGCCTGGCCAGCAGCTCCGTGAAGGCTCCTTCCGGGTCACCCGCATGCGGTGCTGGC GGGTCACCTCCTCTGTGCCGCTGCCCAGCGGGGGCACAAGCAGCCCAGGCCGGGGCCGGG GCGAGGTGCGCCTGGAACTGGCTTTCGAATACCTCATGAGCAAGGACCGGCTACAGTGGG TGACCATCACCAGCCCCCAGGCTATCATGATGAGCATCTGCCTGCAGTCCATGGTAGATG AACTGATGGTGAAGAAATCCGGTGGCAGTATCAGGAAGATGCTGCGCCGGCGGGTCGGGG GCACCCTGAGACGCTCAGACAGCCAACAGGCAGTCAAGTCCCCACCGCTGCTTGAGTCAC CTGACGCCAGCCGGGATACCATGGTCAAACTCTCAAGCAAGCTGAGTGCCGTAAGCTTGC GGGGAATTGGCACTCCCAGTACAGATGCCAGTGCCAGTGATGTCCACGGCAATTTCGCCT TCGAGGGCATTGGAGATGAGGATCTGTGATCTCCAGTGCCCGGATGTCTGCCCTCTACCC TGGAGGAGTGTTCAGAAACTTGCCCTGTGCCTGTATCCCCCAAGCTGGGGGTATTTTCCT TTCTATTGTCCCCTTTTCTCCTCTTGGCCAGGGGCCTCCTAACCCACCTACCCTTCTCCC CCAGGGCTGGCTACACAAAAGATTGCCCCTCTCTTTTCAGAGCTGGCCCTCAATGCCAAA TTAGCATTTAGTATTTTGCACAAAGTCCACGGGACCATGGCTACCTGCCTGGGGAGGAAC TCAGCTCCCCTCAGGCTGCTTCTGGCTTCTCAGGGCCATGAGCCAAGGGGATGGGCAGAG GTCTGTGTACAGTCTGGCCCAGCTCCTCATCATTAAACTCAGCCTGATTGCTGCCTAAAA CTGGTTCCCTCTCACTGCCCCTGCTCCCCCCATCACAGCTGGACTGCTGTGCTAAGGGTG AGGCCCAGTTGTGCTCGTGCCACTGCCAATTCAGCATAGACATGGCTTTGTTAGTGTTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGCGCCCAAAAATGGCGAGCGAAGCTTCGGGGACGCGCTGAATAGCGGAGGCGAGCGTG CAAAGCCACTGCGGCCCTCACAGTTCGGAGCCCGGCCGGGCCCTGCCGCAGGGAACATGC ACTTTTCCATTCCTGAAACCGAGTCCCGCAGCGGGGACAGCGGCGGCTCCGCCTACGTGG CCTATAACATTCACGTGAATGGAGTCCTGCACTGTCGAGTGCGCTACAGTCAGCTCCTGG GGCTGCACGAGCAGCTTCGGAAGGAATATGGGGCCAATGTGCTTCCTGCATTCCCCCCAA AGAAGCTTTTCTCTCTGACCCCTGCTGAGGTAGAACAGAGAAGAGAGCAGTTAGAGAAGT ACATGCAAGCCGTGCGGCAAGACCCATTGCTTGGGAGCAGTGAGACCTTCAATAGTTTCC TGCGTCGAGCACAACAGGAGACACAGCAGGTACCCACAGAAGAGGTCTCCTTGGAAGTGC TACTCAGCAACGGGCAGAAAGTTCTGGTCAACGTGCTAACTTCAGATCAAACTGAGGATG TCCTGGAGGCTGTGGCTGCAAAGCTGGATCTTCCAGATGACTTGATCGGATACTTCAGTC TCTTTCTAGTTCGAGAAAAAGAGGATGGAGCCTTTTCATTTGTACGGAAGTTGCAAGAGT TTGAGCTGCCTTATGTGTCTGTTACCAGTCTTCGAAGTCAAGAGTATAAGATTGTGCTAA GGAAGAGTTATTGGGACTCTGCCTATGATGACGATGTCATGGAGAACCGGGTTGGCCTGA ACCTGCTTTATGCTCAGACGGTATCAGACATCGAGCGTGGGTGGATCCTGGTCACCAAGG AGCAGCACCGGCAGCTCAAATCTTTGCAGGAGAAGGTCTCCAAGAAGGAGTTCCTGCGGC TGGCGCAGACGCTGCGGCACTATGGCTACTTGCGCTTTGATGCCTGTGTGGCTGACTTCC CGGAGAAGGACTGTCCGGTGGTGGTGAGCGCAGGCAATAGTGAGCTCAGCCTCCAGCTCC GCCTGCCTGGCCAGCAGCTCCGTGAAGGCTCCTTCCGGGTCACCCGCATGCGGTGCTGGC GGGTCACCTCCTCTGTGCCGCTGCCCAGCGGGGGCACAAGCAGCCCAGGCCGGGGCCGGG GCGAGGTGCGCCTGGAACTGGCTTTCGAATACCTCATGAGCAAGGACCGGCTACAGTGGG TGACCATCACCAGCCCCCAGGCTATCATGATGAGCATCTGCCTGCAGTCCATGGTAGATG AACTGATGGTGAAGAAATCCGGTGGCAGTATCAGGAAGATGCTGCGCCGGCGGGTCGGGG GCACCCTGAGACGCTCAGACAGCCAACAGGCAGTCAAGTCCCCACCGCTGCTTGAGTCAC CTGACGCCAGCCGGGATACCATGGTCAAACTCTCAAGCAAGCTGAGTGCCGTAAGCTTGC GGGGAATTGGCACTCCCAGTACAGATGCCAGTGCCAGTGATGTCCACGGCAATTTCGCCT TCGAGGGCATTGGAGATGAGGATCTGTGATCTCCAGTGCCCGGATGTCTGCCCTCTACCC TGGAGGAGTGTTCAGAAACTTGCCCTGTGCCTGTATCCCCCAAGCTGGGGGTATTTTCCT TTCTATTGTCCCCTTTTCTCCTCTTGGCCAGGGGCCTCCTAACCCACCTACCCTTCTCCC CCAGGGCTGGCTACACAAAAGATTGCCCCTCTCTTTTCAGAGCTGGCCCTCAATGCCAAA TTAGCATTTAGTATTTTGCACAAAGTCCACGGGACCATGGCTACCTGCCTGGGGAGGAAC TCAGCTCCCCTCAGGCTGCTTCTGGCTTCTCAGGGCCATGAGCCAAGGGGATGGGCAGAG GTCTGTGTACAGTCTGGCCCAGCTCCTCATCATTAAACTCAGCCTGATTGCTGCCTAAAA CTGGTTCCCTCTCACTGCCCCTGCTCCCCCCATCACAGCTGGACTGCTGTGCTAAGGGTG AGGCCCAGTTGTGCTCGTGCCACTGCCAATTCAGCATAGACATGGCTTTGTTAGTGTTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 253-2040, + strand, RNAz p=0.978115 | |
| 253-2040, - strand, RNAz p=0.978115 | |
| 253-345, + strand, RNAz p=0.545134 | |
| 253-345, - strand, RNAz p=0.545134 | |
| 1574-1845, - strand, RNAz p=0.999985 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 253-2040, + strand, RNAz p=0.978115 | |
| 253-2040, - strand, RNAz p=0.978115 | |
| 253-345, + strand, RNAz p=0.545134 | |
| 253-345, - strand, RNAz p=0.545134 | |
| 1574-1845, - strand, RNAz p=0.999985 |
| Aligned organism(s): 47 entry(ies) | More info |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
| 1-180, gnl|bosTau2|chr11 (51981584-51981405) | |
| 1-180, gnl|Hg17|chr2 (27505151-27505325) | |
| 1-180, gnl|Mm7|chr5 (30225822-30225982) | |
| 253-370, gnl|bosTau2|chr11 (51979868-51979751) | |
| 253-370, gnl|canFam2|chr17 (24308530-24308675) | |
| 253-370, gnl|danRer3|chr20 (19804220-19804074) | |
| 253-370, gnl|dasNov1|scaffold_2559 (62839-62694) | |
| 253-370, gnl|echTel1|scaffold_310269 (84570-84707) | |
| 253-370, gnl|fr1|chrUn (289721946-289721806) | |
| 253-370, gnl|galGal2|chr3 (102654019-102653883) | |
| 253-370, gnl|hg17|chr2 (27507124-27507269) | |
| 253-370, gnl|Hg17|chr2 (27507139-27507256) | |
| 253-370, gnl|loxAfr1|scaffold_3331 (21275-21130) | |
| 253-370, gnl|mm7|chr5 (30227295-30227440) | |
| 253-370, gnl|Mm7|chr5 (30227310-30227427) | |
| 253-370, gnl|monDom2|scaffold_1 (148858013-148857866) | |
| 253-370, gnl|oryCun1|scaffold_203841 (276-131) | |
| 253-370, gnl|panTro1|chr12 (28450375-28450520) | |
| 253-370, gnl|rheMac2|chr13 (27367709-27367854) | |
| 253-370, gnl|rn3|chr6 (25161016-25160871) | |
| 253-370, gnl|tetNig1|chr14 (5534221-5534356) | |
| 253-370, gnl|xenTro1|scaffold_1432 (136061-136204) | |
| 430-556, gnl|bosTau2|chr11 (51978784-51978658) | |
| 430-556, gnl|Hg17|chr2 (27508371-27508496) | |
| 430-556, gnl|Mm7|chr5 (30228255-30228379) | |
| 889-1097, gnl|bosTau2|chr11 (51977442-51977234) | |
| 889-1097, gnl|canFam2|chr17 (24310864-24311097) | |
| 889-1097, gnl|danRer3|chr20 (19762347-19762125) | |
| 889-1097, gnl|dasNov1|scaffold_2559 (65507-65274) | |
| 889-1097, gnl|echTel1|scaffold_310269 (87704-87937) | |
| 889-1097, gnl|fr1|chrUn (289715991-289715764) | |
| 889-1097, gnl|galGal2|chr3 (102651597-102651345) | |
| 889-1097, gnl|hg17|chr2 (27510008-27510241) | |
| 889-1097, gnl|Hg17|chr2 (27510022-27510230) | |
| 889-1097, gnl|loxAfr1|scaffold_3331 (18852-18619) | |
| 889-1097, gnl|mm7|chr5 (30229670-30229898) | |
| 889-1097, gnl|Mm7|chr5 (30229684-30229892) | |
| 889-1097, gnl|monDom2|scaffold_1 (148855532-148855303) | |
| 889-1097, gnl|oryCun1|scaffold_181100 (11138-10905) | |
| 889-1097, gnl|panTro1|chr12 (28453315-28453548) | |
| 889-1097, gnl|rheMac2|chr13 (27370329-27370561) | |
| 889-1097, gnl|rn3|chr6 (25158364-25158102) | |
| 889-1097, gnl|tetNig1|chr14 (5538423-5538650) | |
| 889-1097, gnl|xenTro1|scaffold_1432 (153875-154112) | |
| 1416-2040, gnl|bosTau2|chr11 (51976299-51975666) | |
| 1416-2040, gnl|Hg17|chr2 (27511124-27511766) | |
| 1416-2040, gnl|Mm7|chr5 (30230874-30231510) |
| Aligned organism(s): 47 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-180, gnl|bosTau2|chr11 (51981584-51981405) | |
| 1-180, gnl|Hg17|chr2 (27505151-27505325) | |
| 1-180, gnl|Mm7|chr5 (30225822-30225982) | |
| 253-370, gnl|bosTau2|chr11 (51979868-51979751) | |
| 253-370, gnl|canFam2|chr17 (24308530-24308675) | |
| 253-370, gnl|danRer3|chr20 (19804220-19804074) | |
| 253-370, gnl|dasNov1|scaffold_2559 (62839-62694) | |
| 253-370, gnl|echTel1|scaffold_310269 (84570-84707) | |
| 253-370, gnl|fr1|chrUn (289721946-289721806) | |
| 253-370, gnl|galGal2|chr3 (102654019-102653883) | |
| 253-370, gnl|hg17|chr2 (27507124-27507269) | |
| 253-370, gnl|Hg17|chr2 (27507139-27507256) | |
| 253-370, gnl|loxAfr1|scaffold_3331 (21275-21130) | |
| 253-370, gnl|mm7|chr5 (30227295-30227440) | |
| 253-370, gnl|Mm7|chr5 (30227310-30227427) | |
| 253-370, gnl|monDom2|scaffold_1 (148858013-148857866) | |
| 253-370, gnl|oryCun1|scaffold_203841 (276-131) | |
| 253-370, gnl|panTro1|chr12 (28450375-28450520) | |
| 253-370, gnl|rheMac2|chr13 (27367709-27367854) | |
| 253-370, gnl|rn3|chr6 (25161016-25160871) | |
| 253-370, gnl|tetNig1|chr14 (5534221-5534356) | |
| 253-370, gnl|xenTro1|scaffold_1432 (136061-136204) | |
| 430-556, gnl|bosTau2|chr11 (51978784-51978658) | |
| 430-556, gnl|Hg17|chr2 (27508371-27508496) | |
| 430-556, gnl|Mm7|chr5 (30228255-30228379) | |
| 889-1097, gnl|bosTau2|chr11 (51977442-51977234) | |
| 889-1097, gnl|canFam2|chr17 (24310864-24311097) | |
| 889-1097, gnl|danRer3|chr20 (19762347-19762125) | |
| 889-1097, gnl|dasNov1|scaffold_2559 (65507-65274) | |
| 889-1097, gnl|echTel1|scaffold_310269 (87704-87937) | |
| 889-1097, gnl|fr1|chrUn (289715991-289715764) | |
| 889-1097, gnl|galGal2|chr3 (102651597-102651345) | |
| 889-1097, gnl|hg17|chr2 (27510008-27510241) | |
| 889-1097, gnl|Hg17|chr2 (27510022-27510230) | |
| 889-1097, gnl|loxAfr1|scaffold_3331 (18852-18619) | |
| 889-1097, gnl|mm7|chr5 (30229670-30229898) | |
| 889-1097, gnl|Mm7|chr5 (30229684-30229892) | |
| 889-1097, gnl|monDom2|scaffold_1 (148855532-148855303) | |
| 889-1097, gnl|oryCun1|scaffold_181100 (11138-10905) | |
| 889-1097, gnl|panTro1|chr12 (28453315-28453548) | |
| 889-1097, gnl|rheMac2|chr13 (27370329-27370561) | |
| 889-1097, gnl|rn3|chr6 (25158364-25158102) | |
| 889-1097, gnl|tetNig1|chr14 (5538423-5538650) | |
| 889-1097, gnl|xenTro1|scaffold_1432 (153875-154112) | |
| 1416-2040, gnl|bosTau2|chr11 (51976299-51975666) | |
| 1416-2040, gnl|Hg17|chr2 (27511124-27511766) | |
| 1416-2040, gnl|Mm7|chr5 (30230874-30231510) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| clu (0.478583) | |
| cov (0.396458) | |
| pty (0.285429) | |
| hlv (0.278513) | |
| eep (0.245128) | |
| cly (0.241284) | |
| eru (0.240096) | |
| jej (0.197844) | |
| col (0.195008) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| che (0.136314) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.478583) | |
| cov (0.396458) | |
| pty (0.285429) | |
| hlv (0.278513) | |
| eep (0.245128) | |
| cly (0.241284) | |
| eru (0.240096) | |
| jej (0.197844) | |
| col (0.195008) | |
| fty (0.17584) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| che (0.136314) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| jca (0.11396) | |
| cty (0.10408) | |
| eje (0.0988338) |