Ss1.1-Pig4-TMW8061J19.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGAAGGTACGACGTGCTCTTCATGCCGCCGTCCTTCCCGTTTGGAGGGATGGAGAACC CGTGTCTGACCTTCGTCACCCCCTGCCTGCTGGCCGGGGACCGCTCCTTGGCCGACGTCA TCATCCACGAGATCTCCCACAGTTGGTTTGGGAACCTGGTCACCAACGCCCACTGGGGGG AGTTCTGGCTCAACGAGGGCTTCACCATGTTCGCCCAGAGGAGGATTTCCACCATCCTGT TCGGGGCCGCGTACACCTGCCTGGAAGCCGCCACCGGCCGGGCTCTGCTCCGGCAGCACA TGGACGTCACGGGCGAGGAGCATCCACTGAACAAACTCCGAGTGAAGATTGAGCCAGGTG TCGACCCCGATGACACGTACAACGAGACCCCCTACGAGAAGGGCTTCTGCTTTGTCTCCT ACTTGGCTCACCTGGTGGGCGACCAGGACCAGTTTGACCGTTTCCTCAGGGCCTACGTGG AAGAGTTTAAGTTCCAAAGCATCTTAGCCGACGACTTTCTGGAGTTCTTCTTGGACTATT TCCCTGAGCTGAAGAGAAGGAAGGTGGATTCCATCCCAGGGTTGGAGTTTGACCGCTGGC TGAACACCCCGGGCTGGCCCCCCTTCTTGCCCGACCTCTCCCCCGGGGATGCGCTCATGA AGCCGGCGGATGAGCTGGCCGAGCTCTGGGCGACCGAAGCGCTGGACATGAGGGCCATTG GCGCCGTGTCCACCTCTGCCTGGAAGACCTACCAGCTGGTTTACTTCCTGGATAGGATCC TCCAGAAATCCCCTCTCCCTCCAGGGAACGTGAAGAAACTTGGAGAGACGTATCCAAAGA TCTCAAACGCCCAGAACGCGGAGCTGCGGCTGCGATGGGGCCAGATTGTCCTCAAGAACG ACCACCAGGAGGATTTCTGGAAAGTGAAGGAATTCCTGTGCAGCCAGGGGAAGCAGAAGT ACACCCTCCCGCTGTACCATGCCATGATGGGGGGCAGCGAGGCCGCCCGTGCCCTCGCCA AGGAGACCTTTGCGGCCACGGCCTCTCAGCTCCACAGCAACGTGGTCCACTACGTCCAGC AGATCGTGGAGCCGCTGGGCAGCTAGAGGTGGCTCGCAGAGTAATGGCTCCCGAATTCCA GGTCTCTGGTCAGTGTCCCAAGTTCATGTCCTGCGGGATAACCTACTGTCTGGGCTTGGC CTTGGGCACCCCGGGCCTCTGCTCTGACAGGTCGACTCTGGACCCGAGTCCTGAGACTGG AACCTCCACGCGCCTTGGGCAGCAGCGCCTGCGGCTCTGGGGGCCGCCGCCTCCCCAGCT GAGTCTCTGGGATTTTTTTCCTCTTTTTAATTTTTTTTTTCCTTTTTCTTTTTTTTCTTT GGCTGATTCATGAAATACTGTGCAAAGGGCTGCATTTTGGTGATTCTTTTTCAAGTTTAA TCGCTCTTTTAATAAATATTTTTTTTTAAGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGAAGGTACGACGTGCTCTTCATGCCGCCGTCCTTCCCGTTTGGAGGGATGGAGAACC CGTGTCTGACCTTCGTCACCCCCTGCCTGCTGGCCGGGGACCGCTCCTTGGCCGACGTCA TCATCCACGAGATCTCCCACAGTTGGTTTGGGAACCTGGTCACCAACGCCCACTGGGGGG AGTTCTGGCTCAACGAGGGCTTCACCATGTTCGCCCAGAGGAGGATTTCCACCATCCTGT TCGGGGCCGCGTACACCTGCCTGGAAGCCGCCACCGGCCGGGCTCTGCTCCGGCAGCACA TGGACGTCACGGGCGAGGAGCATCCACTGAACAAACTCCGAGTGAAGATTGAGCCAGGTG TCGACCCCGATGACACGTACAACGAGACCCCCTACGAGAAGGGCTTCTGCTTTGTCTCCT ACTTGGCTCACCTGGTGGGCGACCAGGACCAGTTTGACCGTTTCCTCAGGGCCTACGTGG AAGAGTTTAAGTTCCAAAGCATCTTAGCCGACGACTTTCTGGAGTTCTTCTTGGACTATT TCCCTGAGCTGAAGAGAAGGAAGGTGGATTCCATCCCAGGGTTGGAGTTTGACCGCTGGC TGAACACCCCGGGCTGGCCCCCCTTCTTGCCCGACCTCTCCCCCGGGGATGCGCTCATGA AGCCGGCGGATGAGCTGGCCGAGCTCTGGGCGACCGAAGCGCTGGACATGAGGGCCATTG GCGCCGTGTCCACCTCTGCCTGGAAGACCTACCAGCTGGTTTACTTCCTGGATAGGATCC TCCAGAAATCCCCTCTCCCTCCAGGGAACGTGAAGAAACTTGGAGAGACGTATCCAAAGA TCTCAAACGCCCAGAACGCGGAGCTGCGGCTGCGATGGGGCCAGATTGTCCTCAAGAACG ACCACCAGGAGGATTTCTGGAAAGTGAAGGAATTCCTGTGCAGCCAGGGGAAGCAGAAGT ACACCCTCCCGCTGTACCATGCCATGATGGGGGGCAGCGAGGCCGCCCGTGCCCTCGCCA AGGAGACCTTTGCGGCCACGGCCTCTCAGCTCCACAGCAACGTGGTCCACTACGTCCAGC AGATCGTGGAGCCGCTGGGCAGCTAGAGGTGGCTCGCAGAGTAATGGCTCCCGAATTCCA GGTCTCTGGTCAGTGTCCCAAGTTCATGTCCTGCGGGATAACCTACTGTCTGGGCTTGGC CTTGGGCACCCCGGGCCTCTGCTCTGACAGGTCGACTCTGGACCCGAGTCCTGAGACTGG AACCTCCACGCGCCTTGGGCAGCAGCGCCTGCGGCTCTGGGGGCCGCCGCCTCCCCAGCT GAGTCTCTGGGATTTTTTTCCTCTTTTTAATTTTTTTTTTCCTTTTTCTTTTTTTTCTTT GGCTGATTCATGAAATACTGTGCAAAGGGCTGCATTTTGGTGATTCTTTTTCAAGTTTAA TCGCTCTTTTAATAAATATTTTTTTTTAAGTGGAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 82-244, + strand, RNAz p=0.948307 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 82-244, + strand, RNAz p=0.948307 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 3-244, gnl|bosTau2|chr16 (46864075-46864316) | |
| 3-244, gnl|Hg17|chr1 (198698099-198698340) | |
| 3-244, gnl|Mm7|chr1 (135161554-135161313) | |
| 355-471, gnl|bosTau2|chr16 (46866498-46866614) | |
| 355-471, gnl|Hg17|chr1 (198702157-198702274) | |
| 355-471, gnl|Mm7|chr1 (135157070-135156954) | |
| 577-805, gnl|bosTau2|chr16 (46867529-46867757) | |
| 577-805, gnl|canFam2|chr7 (3964202-3964028) | |
| 577-805, gnl|danRer3|chrUn (50443820-50443647) | |
| 577-805, gnl|dasNov1|scaffold_1862 (206266-206439) | |
| 577-805, gnl|echTel1|scaffold_131719 (1547-1701) | |
| 577-805, gnl|galGal2|chr32 (475990-476157) | |
| 577-805, gnl|hg17|chr1 (198704013-198704187) | |
| 577-805, gnl|Hg17|chr1 (198704019-198704247) | |
| 577-805, gnl|loxAfr1|scaffold_2178 (20460-20634) | |
| 577-805, gnl|mm7|chr1 (135155203-135155029) | |
| 577-805, gnl|Mm7|chr1 (135155195-135154967) | |
| 577-805, gnl|monDom2|scaffold_13 (1631242-1631416) | |
| 577-805, gnl|oryCun1|scaffold_185009 (46350-46524) | |
| 577-805, gnl|panTro1|chr1 (181396206-181396380) | |
| 577-805, gnl|rheMac2|chr1 (168482317-168482143) | |
| 577-805, gnl|rn3|chr13 (48284978-48284804) | |
| 577-805, gnl|tetNig1|chrUn_random (135670743-135670559) | |
| 577-805, gnl|xenTro1|scaffold_19 (3176967-3176793) | |
| 945-1109, gnl|bosTau2|chr16 (46869733-46869897) | |
| 945-1109, gnl|Hg17|chr1 (198706340-198706504) | |
| 945-1109, gnl|Mm7|chr1 (135152917-135152753) | |
| 1208-1463, gnl|bosTau2|chr16 (46869974-46870220) | |
| 1208-1463, gnl|Hg17|chr1 (198706629-198706915) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-244, gnl|bosTau2|chr16 (46864075-46864316) | |
| 3-244, gnl|Hg17|chr1 (198698099-198698340) | |
| 3-244, gnl|Mm7|chr1 (135161554-135161313) | |
| 355-471, gnl|bosTau2|chr16 (46866498-46866614) | |
| 355-471, gnl|Hg17|chr1 (198702157-198702274) | |
| 355-471, gnl|Mm7|chr1 (135157070-135156954) | |
| 577-805, gnl|bosTau2|chr16 (46867529-46867757) | |
| 577-805, gnl|canFam2|chr7 (3964202-3964028) | |
| 577-805, gnl|danRer3|chrUn (50443820-50443647) | |
| 577-805, gnl|dasNov1|scaffold_1862 (206266-206439) | |
| 577-805, gnl|echTel1|scaffold_131719 (1547-1701) | |
| 577-805, gnl|galGal2|chr32 (475990-476157) | |
| 577-805, gnl|hg17|chr1 (198704013-198704187) | |
| 577-805, gnl|Hg17|chr1 (198704019-198704247) | |
| 577-805, gnl|loxAfr1|scaffold_2178 (20460-20634) | |
| 577-805, gnl|mm7|chr1 (135155203-135155029) | |
| 577-805, gnl|Mm7|chr1 (135155195-135154967) | |
| 577-805, gnl|monDom2|scaffold_13 (1631242-1631416) | |
| 577-805, gnl|oryCun1|scaffold_185009 (46350-46524) | |
| 577-805, gnl|panTro1|chr1 (181396206-181396380) | |
| 577-805, gnl|rheMac2|chr1 (168482317-168482143) | |
| 577-805, gnl|rn3|chr13 (48284978-48284804) | |
| 577-805, gnl|tetNig1|chrUn_random (135670743-135670559) | |
| 577-805, gnl|xenTro1|scaffold_19 (3176967-3176793) | |
| 945-1109, gnl|bosTau2|chr16 (46869733-46869897) | |
| 945-1109, gnl|Hg17|chr1 (198706340-198706504) | |
| 945-1109, gnl|Mm7|chr1 (135152917-135152753) | |
| 1208-1463, gnl|bosTau2|chr16 (46869974-46870220) | |
| 1208-1463, gnl|Hg17|chr1 (198706629-198706915) |
| Expressed library(ies): 22 entry(ies) | More info |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
| csp (0.483559) | |
| pgl (0.35545) | |
| ill (0.351185) | |
| jej (0.296765) | |
| ute (0.265569) | |
| eru (0.240096) | |
| ece (0.229305) | |
| jca (0.22792) | |
| cty (0.20816) | |
| nbm (0.198649) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sto (0.179824) | |
| fty (0.17584) | |
| ton (0.1755) | |
| nje (0.16592) | |
| nco (0.161734) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ecc (0.115035) |
| Expressed library(ies): 22 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| csp (0.483559) | |
| pgl (0.35545) | |
| ill (0.351185) | |
| jej (0.296765) | |
| ute (0.265569) | |
| eru (0.240096) | |
| ece (0.229305) | |
| jca (0.22792) | |
| cty (0.20816) | |
| nbm (0.198649) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sto (0.179824) | |
| fty (0.17584) | |
| ton (0.1755) | |
| nje (0.16592) | |
| nco (0.161734) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ecc (0.115035) |