Non-Coding RNA Search

Ss1.1-Pig4-TMW8061J20.3

Sequence:


               
               AAAAAAAAAAAAAAAAAAAAACCCACGAAGAAAATTTTTTGGCCTCTTGAGAGTTTGGTT
TATGTTGACATAAAGTTGAAATCCATGCATATTTTAGGAAATTGACACTGCAGATTGTTT
GGGCCCTAACAGCATGTTGTTGCTATCCTGTTCACTTCAGCACTAGGTTTGGGGTGGGGA
TTGGGGGCAGAAATTTCTACAAGGTAATTGGAAAGATAACTCTTTATAAAACCATTTCCC
CCTAATCCACATAAATGAATTAGAGAACTGATTTAAACAAAGCTTCACAAAATATTTAGA
AAAACATCTAAAGCTAATATTGGAGAAGCAAGAGAAGCATGGCTAAATTCAGTTGGATTG
TTTTTACTTTTGGTGTATGAATATGGCAAGCTATGTAGTGTCTTTTTCGTTTTTTCTTTT
TAGAAATACTTAGAAAATGTAATTTAATATTAGAAATCCTGTACTTGAAAGAAGCCTCAA
CTAACAGTGGACTTATGAAACAAAGTTAAAAACAAACATGAAAGTGTAAAAACATCTTTG
TTTGAATAGTTTGCTGCTGATTATGTTTTCATTATGTGTGAAAATCCTTTGAAATTGTAT
TGTCACCTTACATTTGGTTAAATATTGCTTTTAAAAATCGCATAGTGTGTGGTTTAAGAG
TTAGTTAATAGTGTCTACATTTTTTAAAGTTTTATATTAAGTATTTATATATGAAACTGC
AGTAGGGCCATTTTCAATTAGTCTGAAAGTTTTCAGGCCTTGAAATAAATCTTGACCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAAAAAAAAAACCCACGAAGAAAATTTTTTGGCCTCTTGAGAGTTTGGTT
TATGTTGACATAAAGTTGAAATCCATGCATATTTTAGGAAATTGACACTGCAGATTGTTT
GGGCCCTAACAGCATGTTGTTGCTATCCTGTTCACTTCAGCACTAGGTTTGGGGTGGGGA
TTGGGGGCAGAAATTTCTACAAGGTAATTGGAAAGATAACTCTTTATAAAACCATTTCCC
CCTAATCCACATAAATGAATTAGAGAACTGATTTAAACAAAGCTTCACAAAATATTTAGA
AAAACATCTAAAGCTAATATTGGAGAAGCAAGAGAAGCATGGCTAAATTCAGTTGGATTG
TTTTTACTTTTGGTGTATGAATATGGCAAGCTATGTAGTGTCTTTTTCGTTTTTTCTTTT
TAGAAATACTTAGAAAATGTAATTTAATATTAGAAATCCTGTACTTGAAAGAAGCCTCAA
CTAACAGTGGACTTATGAAACAAAGTTAAAAACAAACATGAAAGTGTAAAAACATCTTTG
TTTGAATAGTTTGCTGCTGATTATGTTTTCATTATGTGTGAAAATCCTTTGAAATTGTAT
TGTCACCTTACATTTGGTTAAATATTGCTTTTAAAAATCGCATAGTGTGTGGTTTAAGAG
TTAGTTAATAGTGTCTACATTTTTTAAAGTTTTATATTAAGTATTTATATATGAAACTGC
AGTAGGGCCATTTTCAATTAGTCTGAAAGTTTTCAGGCCTTGAAATAAATCTTGACCAAG

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               36-780, gnl|bosTau2|chr8 (24696042-24696784)
               

               
               36-780, gnl|Hg17|chr9 (76230660-76230001)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-780, gnl|bosTau2|chr8 (24696042-24696784)
               

               
               36-780, gnl|Hg17|chr9 (76230660-76230001)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               tra (0.369276)
               

               
               nms (0.213858)
               

               
               fat (0.147427)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               tra (0.369276)
               

               
               nms (0.213858)
               

               
               fat (0.147427)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

	36-780, gnl\|bosTau2\|chr8 (24696042-24696784)
	36-780, gnl\|Hg17\|chr9 (76230660-76230001)

	pro (0.512033)
	tra (0.369276)
	nms (0.213858)
	fat (0.147427)
	thg (0.126791)
	ese (0.126502)
	ldo (0.0970026)