Ss1.1-Pig4-TMW8061J21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGCCTCCCGCCCGCACTGCCCTCTCACCTCTGCAGGGAGGAGGAGAGGAGTTAGCGAG CTGTTGGTGCTAGAAGCCTTCTGGATCACGTGCTCCGGGATCGGCCTTTCTCAAGAGCCC GCGCTTCCATCCTTAACCCGAGAAGACGCTCCACTTCCCACGCGTCCCATCTGCCTGGGT TTCGGAGATTTTTTTGCCTTCTGACCTGGAGGCAGAGGGATTGAAGCCATCGCCTTCCTC CCCCCAGCTGGAAACACAAGAAGCAGCTGAGATTTGGGTCAGTCCTCGGCCTCTTAAGTG GCCAGATAGACCCAGCCGCGGAATGCAGTGTTAAGACTGGGGGCCTCAAGGAAGAAAAGT GGGAGACCCGCTTTTTCGTGCACACTCGCACCTGCTTCCTCCGGCCCTGCTGTGGGTGGG GCTCTCTGCCCGGGACGGCCTGCCCCTTGCGTGGCTTTTGTGGTGTGGTGTTCTGTTTAT TTGCTAAGCGGGGCAGGTTACACGTGTGGTGCAGGAGTCCTGAGGCTTTGCTGCCATACA CTTTTTTTTTTTTTTTTTTAAGATTTCGGTTTGTCAGACTGAATGAGCTCATTTCATGCA GCGAGGGTTTTGTGGGGCCTGAGCTGGCCAAGGCCAGTAGGAGTAAGCTTTCTTGTGTGA AGAATTTGGTGAGGGAGGTGCCAGTCCAGGGTATCAGTCCCCAAAATGAGGGTGGCTGTC CCTTTGTCCAAACCTCACTCGGTTGCCTTTTTCTTGGGCCGCCCGACTTCCTGTCACAAC TAGAAAGAGAAGTTATTTTTTCAAACGAGGAGCCGGGCCCTCGGTCCACTTCCCGCCCAG CCAGAGCTCACCTGGTGGGCTTGGGGTTTGGTTTTCACAGTTTCCGAGTTAAAACTGCAG GCCACGTCCACCTCCCAGATCACCCACGAGGGCATAGTGAGCATCCTGAGTGGCCATAGG CATTTTTTTTATTAGCAGCTTGAAGACCTGGATCCAGGTGTCCCCAAGAAAACTCCAAGT GCCCGGTTAACTCAGTAAGTCAGCCAGCTGAGAAGACGGTGAATGTCCAGAACAAGTTGT CAGCTGAGGTGGCACAAAATCGTGGTCTCCCCTCACTCAGGGGACAGAGTGCTCCTGCCA GAGGCTCCGCCCCGTGACATTCTCTGGGCAGTGGTCCTCCATTTGCCCTGTTCTTGGCAT GTTCTTGGCCCATGTGGAGAGCAGTGAAGGAACTGGGAGCTGCTGCCCCCTTTCTGCTCA GGAGAAGTCTCCTCACCCCACATCTGTCCGCCCAGCTTCGTCTGGGGCAGCTACACAGAA GCCTCCAGAAGCCACAGTGGGTCCCTGGATGTTCCAGCCCACTGAGGGAACGCGGTCTCA TTTGGATTTGCAGTGTTAGTTAGGACCTTCTTTATTTACATGACCAGGTTTTTGCCTTCC ATCAAGGCGCAAAACTCCATCACTGTCGCTCCCGAAGCCCAGAATAAAGAGGCGTTTTAA GTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGCCTACTCCCGAG AAATTTTCCTGGGGGGGGCCAATTTTTCCCCCCCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGCCTCCCGCCCGCACTGCCCTCTCACCTCTGCAGGGAGGAGGAGAGGAGTTAGCGAG CTGTTGGTGCTAGAAGCCTTCTGGATCACGTGCTCCGGGATCGGCCTTTCTCAAGAGCCC GCGCTTCCATCCTTAACCCGAGAAGACGCTCCACTTCCCACGCGTCCCATCTGCCTGGGT TTCGGAGATTTTTTTGCCTTCTGACCTGGAGGCAGAGGGATTGAAGCCATCGCCTTCCTC CCCCCAGCTGGAAACACAAGAAGCAGCTGAGATTTGGGTCAGTCCTCGGCCTCTTAAGTG GCCAGATAGACCCAGCCGCGGAATGCAGTGTTAAGACTGGGGGCCTCAAGGAAGAAAAGT GGGAGACCCGCTTTTTCGTGCACACTCGCACCTGCTTCCTCCGGCCCTGCTGTGGGTGGG GCTCTCTGCCCGGGACGGCCTGCCCCTTGCGTGGCTTTTGTGGTGTGGTGTTCTGTTTAT TTGCTAAGCGGGGCAGGTTACACGTGTGGTGCAGGAGTCCTGAGGCTTTGCTGCCATACA CTTTTTTTTTTTTTTTTTTAAGATTTCGGTTTGTCAGACTGAATGAGCTCATTTCATGCA GCGAGGGTTTTGTGGGGCCTGAGCTGGCCAAGGCCAGTAGGAGTAAGCTTTCTTGTGTGA AGAATTTGGTGAGGGAGGTGCCAGTCCAGGGTATCAGTCCCCAAAATGAGGGTGGCTGTC CCTTTGTCCAAACCTCACTCGGTTGCCTTTTTCTTGGGCCGCCCGACTTCCTGTCACAAC TAGAAAGAGAAGTTATTTTTTCAAACGAGGAGCCGGGCCCTCGGTCCACTTCCCGCCCAG CCAGAGCTCACCTGGTGGGCTTGGGGTTTGGTTTTCACAGTTTCCGAGTTAAAACTGCAG GCCACGTCCACCTCCCAGATCACCCACGAGGGCATAGTGAGCATCCTGAGTGGCCATAGG CATTTTTTTTATTAGCAGCTTGAAGACCTGGATCCAGGTGTCCCCAAGAAAACTCCAAGT GCCCGGTTAACTCAGTAAGTCAGCCAGCTGAGAAGACGGTGAATGTCCAGAACAAGTTGT CAGCTGAGGTGGCACAAAATCGTGGTCTCCCCTCACTCAGGGGACAGAGTGCTCCTGCCA GAGGCTCCGCCCCGTGACATTCTCTGGGCAGTGGTCCTCCATTTGCCCTGTTCTTGGCAT GTTCTTGGCCCATGTGGAGAGCAGTGAAGGAACTGGGAGCTGCTGCCCCCTTTCTGCTCA GGAGAAGTCTCCTCACCCCACATCTGTCCGCCCAGCTTCGTCTGGGGCAGCTACACAGAA GCCTCCAGAAGCCACAGTGGGTCCCTGGATGTTCCAGCCCACTGAGGGAACGCGGTCTCA TTTGGATTTGCAGTGTTAGTTAGGACCTTCTTTATTTACATGACCAGGTTTTTGCCTTCC ATCAAGGCGCAAAACTCCATCACTGTCGCTCCCGAAGCCCAGAATAAAGAGGCGTTTTAA GTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGCCTACTCCCGAG AAATTTTCCTGGGGGGGGCCAATTTTTCCCCCCCCC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 275-373, - strand, RNAz p=0.711466 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 275-373, - strand, RNAz p=0.711466 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 2-760, gnl|bosTau2|chr7 (15392007-15392749) | |
| 2-760, gnl|Hg17|chr19 (4744991-4745808) | |
| 829-1067, gnl|bosTau2|chr7 (15392756-15392993) | |
| 829-1067, gnl|canFam2|chr20 (57917220-57916490) | |
| 829-1067, gnl|canFam2|chr20 (57916525-57917052) | |
| 829-1067, gnl|canFam2|chr20 (57917230-57916697) | |
| 829-1067, gnl|canFam2|chr20 (57917230-57916491) | |
| 829-1067, gnl|hg17|chr13 (18140154-18140827) | |
| 829-1067, gnl|hg17|chr18 (14380274-14380944) | |
| 829-1067, gnl|hg17|chr19 (4745660-4746546) | |
| 829-1067, gnl|Hg17|chr19 (4745860-4746094) | |
| 829-1067, gnl|hg17|chr21 (14059323-14060232) | |
| 829-1067, gnl|hg17|chrX (82953460-82954204) | |
| 829-1067, gnl|loxAfr1|scaffold_20221 (9210-8322) | |
| 829-1067, gnl|loxAfr1|scaffold_20221 (8367-9035) | |
| 829-1067, gnl|loxAfr1|scaffold_20221 (9210-8554) | |
| 829-1067, gnl|loxAfr1|scaffold_20221 (9210-8332) | |
| 829-1067, gnl|loxAfr1|scaffold_20221 (8307-9078) | |
| 829-1067, gnl|monDom2|scaffold_85 (1934881-1935848) | |
| 829-1067, gnl|monDom2|scaffold_85 (1935800-1935078) | |
| 829-1067, gnl|monDom2|scaffold_85 (1934871-1935545) | |
| 829-1067, gnl|monDom2|scaffold_85 (1934871-1935835) | |
| 829-1067, gnl|panTro1|chr20 (5028409-5029311) | |
| 829-1067, gnl|panTro1|chr20 (5029337-5028583) | |
| 829-1067, gnl|panTro1|chr22 (14048297-14049220) | |
| 829-1067, gnl|panTro1|chr22 (14049162-14048490) | |
| 829-1067, gnl|panTro1|chr22 (14048287-14048965) | |
| 829-1067, gnl|rheMac2|chr19 (4684119-4685013) | |
| 829-1067, gnl|rheMac2|chr19 (4684955-4684311) | |
| 829-1067, gnl|rheMac2|chr19 (4684109-4684754) | |
| 829-1067, gnl|rheMac2|chr19 (4684109-4684990) | |
| 829-1067, gnl|rheMac2|chrX (82692761-82693504) | |
| 1293-1491, gnl|bosTau2|chr7 (15393168-15393369) | |
| 1293-1491, gnl|canFam2|chr20 (57917220-57916490) | |
| 1293-1491, gnl|canFam2|chr20 (57916525-57917052) | |
| 1293-1491, gnl|canFam2|chr20 (57917230-57916491) | |
| 1293-1491, gnl|hg17|chr18 (14380274-14380944) | |
| 1293-1491, gnl|hg17|chr19 (4745660-4746546) | |
| 1293-1491, gnl|Hg17|chr19 (4746287-4746504) | |
| 1293-1491, gnl|hg17|chr21 (14059323-14060232) | |
| 1293-1491, gnl|hg17|chrX (82953460-82954204) | |
| 1293-1491, gnl|loxAfr1|scaffold_20221 (9210-8322) | |
| 1293-1491, gnl|loxAfr1|scaffold_20221 (8367-9035) | |
| 1293-1491, gnl|loxAfr1|scaffold_20221 (9210-8332) | |
| 1293-1491, gnl|loxAfr1|scaffold_20221 (8307-9078) | |
| 1293-1491, gnl|monDom2|scaffold_85 (1934881-1935848) | |
| 1293-1491, gnl|monDom2|scaffold_85 (1935800-1935078) | |
| 1293-1491, gnl|monDom2|scaffold_85 (1934871-1935835) | |
| 1293-1491, gnl|panTro1|chr20 (5028409-5029311) | |
| 1293-1491, gnl|panTro1|chr20 (5029337-5028583) | |
| 1293-1491, gnl|panTro1|chr22 (14048297-14049220) | |
| 1293-1491, gnl|panTro1|chr22 (14049162-14048490) | |
| 1293-1491, gnl|rheMac2|chr19 (4684119-4685013) | |
| 1293-1491, gnl|rheMac2|chr19 (4684955-4684311) | |
| 1293-1491, gnl|rheMac2|chr19 (4684109-4684990) | |
| 1293-1491, gnl|rheMac2|chrX (82692761-82693504) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-760, gnl|bosTau2|chr7 (15392007-15392749) | |
| 2-760, gnl|Hg17|chr19 (4744991-4745808) | |
| 829-1067, gnl|bosTau2|chr7 (15392756-15392993) | |
| 829-1067, gnl|canFam2|chr20 (57917220-57916490) | |
| 829-1067, gnl|canFam2|chr20 (57916525-57917052) | |
| 829-1067, gnl|canFam2|chr20 (57917230-57916697) | |
| 829-1067, gnl|canFam2|chr20 (57917230-57916491) | |
| 829-1067, gnl|hg17|chr13 (18140154-18140827) | |
| 829-1067, gnl|hg17|chr18 (14380274-14380944) | |
| 829-1067, gnl|hg17|chr19 (4745660-4746546) | |
| 829-1067, gnl|Hg17|chr19 (4745860-4746094) | |
| 829-1067, gnl|hg17|chr21 (14059323-14060232) | |
| 829-1067, gnl|hg17|chrX (82953460-82954204) | |
| 829-1067, gnl|loxAfr1|scaffold_20221 (9210-8322) | |
| 829-1067, gnl|loxAfr1|scaffold_20221 (8367-9035) | |
| 829-1067, gnl|loxAfr1|scaffold_20221 (9210-8554) | |
| 829-1067, gnl|loxAfr1|scaffold_20221 (9210-8332) | |
| 829-1067, gnl|loxAfr1|scaffold_20221 (8307-9078) | |
| 829-1067, gnl|monDom2|scaffold_85 (1934881-1935848) | |
| 829-1067, gnl|monDom2|scaffold_85 (1935800-1935078) | |
| 829-1067, gnl|monDom2|scaffold_85 (1934871-1935545) | |
| 829-1067, gnl|monDom2|scaffold_85 (1934871-1935835) | |
| 829-1067, gnl|panTro1|chr20 (5028409-5029311) | |
| 829-1067, gnl|panTro1|chr20 (5029337-5028583) | |
| 829-1067, gnl|panTro1|chr22 (14048297-14049220) | |
| 829-1067, gnl|panTro1|chr22 (14049162-14048490) | |
| 829-1067, gnl|panTro1|chr22 (14048287-14048965) | |
| 829-1067, gnl|rheMac2|chr19 (4684119-4685013) | |
| 829-1067, gnl|rheMac2|chr19 (4684955-4684311) | |
| 829-1067, gnl|rheMac2|chr19 (4684109-4684754) | |
| 829-1067, gnl|rheMac2|chr19 (4684109-4684990) | |
| 829-1067, gnl|rheMac2|chrX (82692761-82693504) | |
| 1293-1491, gnl|bosTau2|chr7 (15393168-15393369) | |
| 1293-1491, gnl|canFam2|chr20 (57917220-57916490) | |
| 1293-1491, gnl|canFam2|chr20 (57916525-57917052) | |
| 1293-1491, gnl|canFam2|chr20 (57917230-57916491) | |
| 1293-1491, gnl|hg17|chr18 (14380274-14380944) | |
| 1293-1491, gnl|hg17|chr19 (4745660-4746546) | |
| 1293-1491, gnl|Hg17|chr19 (4746287-4746504) | |
| 1293-1491, gnl|hg17|chr21 (14059323-14060232) | |
| 1293-1491, gnl|hg17|chrX (82953460-82954204) | |
| 1293-1491, gnl|loxAfr1|scaffold_20221 (9210-8322) | |
| 1293-1491, gnl|loxAfr1|scaffold_20221 (8367-9035) | |
| 1293-1491, gnl|loxAfr1|scaffold_20221 (9210-8332) | |
| 1293-1491, gnl|loxAfr1|scaffold_20221 (8307-9078) | |
| 1293-1491, gnl|monDom2|scaffold_85 (1934881-1935848) | |
| 1293-1491, gnl|monDom2|scaffold_85 (1935800-1935078) | |
| 1293-1491, gnl|monDom2|scaffold_85 (1934871-1935835) | |
| 1293-1491, gnl|panTro1|chr20 (5028409-5029311) | |
| 1293-1491, gnl|panTro1|chr20 (5029337-5028583) | |
| 1293-1491, gnl|panTro1|chr22 (14048297-14049220) | |
| 1293-1491, gnl|panTro1|chr22 (14049162-14048490) | |
| 1293-1491, gnl|rheMac2|chr19 (4684119-4685013) | |
| 1293-1491, gnl|rheMac2|chr19 (4684955-4684311) | |
| 1293-1491, gnl|rheMac2|chr19 (4684109-4684990) | |
| 1293-1491, gnl|rheMac2|chrX (82692761-82693504) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| cly (0.361925) | |
| nmm (0.265604) | |
| nms (0.213858) | |
| mas (0.210305) | |
| nep (0.183925) | |
| ton (0.1755) | |
| nco (0.161734) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ste (0.135208) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cly (0.361925) | |
| nmm (0.265604) | |
| nms (0.213858) | |
| mas (0.210305) | |
| nep (0.183925) | |
| ton (0.1755) | |
| nco (0.161734) | |
| cag (0.151194) | |
| bfe (0.149858) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ste (0.135208) | |
| jca (0.11396) | |
| nbm (0.0993246) | |
| eje (0.0988338) |