Ss1.1-Pig4-TMW8061J22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACTTCAGGTACCAGCGTGCCCAGCGTCCCGCCGTCCCCCCGCTGGCGTCCGGGGCGCC GCCTCTGTGTAGGGCGGGCGAGGAGGCAGTCGAGGCGGAGCGGATGGCTGCACTGAGGGC GGGGCGGGGTGCAGGCTGGAGCCTTCGTGGATGGCGGGCTTTGGCGGGGGTTCGCTGGGG AAAGGGACCCCTGTTGACCCCTGACCTCCGAGCCCTGCTGACGTCAGGAACTCCTGACCC GCGGGCCGGAGTGACTTATGGGACCCCTGGCTTCAGGGCCCGCTTGTCTGTGGGGGTCCC CGAACCACGAACATGTCTGACGTCGGGGACTTCGGATCCTCGAGTAGGGGATCCCCGGAC CCGGGAAGACTCAGGGACCCCTGGAAACCGTCCGCGCCAGTGGCTGGCGGTGGCGCTAGG CGCTGGAGGGGCAGTGCTGTTGTTGTTGTGGGGCGGGGGGCGGGGGCCCCCGGCCGTCCT CGCCGCAGTCCTTAGCTCGCCGCCCACGTCTCCCAGGAGCCAGTACAACTTCATCGCGGA CGTGGTGGAGAAGACGGCCCCTGCCGTGGTTTATATCGAGATCTTGGGCCGGCACCCTTT CTCGGGCCGCGAAGTACCTATCTCCAATGGCTCAGGATTCGTGGTGGCTAGTGACGGGCT CATTGTTACCAACGCTCATGTGGTGGCTGATCGGCGCCGAGTTCGGGTGAGGCTGCCCAG TGGCGACACGTATGAGGCCGTGGTCACAGCTGTGGATCCCGTGGCAGACATTGCCACGCT GAGGATTCAGACCAAGGAGCCTCTCCCCACACTGCCCCTGGGACGCTCAGCCGACGTCCG GCAAGGGGAGTTTGTTGTTGCCATGGGAAGTCCCTTTGCGCTGCAGAACACGATCACATC TGGCATTGTCAGCTCTGCTCAGCGTCCAGCCAAAGACCTGGGCCTTCCCCAAACCAATGT GGAATACATCCAGACTGATGCAGCTATTGATTTTGGAAACTCTGGAGGTCCCCTGGTTAA CCTGGATGGGGAGGTGATTGGGGTGAATACCATGAAGGTCACAGCTGGCATCTCCTTTGC CATCCCTTCTGATCGTCTTCGAGAGTTTCTGCGACGTGGAGAAAAGAAGAATTCCTGGTT TGGGAACAGTGGGTCCCAGCGCCGCTACATTGGGGTGATGATGCTGACCCTGACTCCCAG CATCCTTGCTGAACTACAGCTTCGAGAACCAAGCTTTCCTGATGTTCAGCATGGTGTGCT CATCCATAAAGTCATCCTGGACTCCCCTGCACACCGGGCTGGTCTACGGCCAGGCGATGT GATCTTAGCCATTGGGGAGCAGCTGGTACAAAACGCTGAAGATATTTATGAAGCTGTTCG AACCCAATCCCAGCTGGCAGTGCGGATCCGGCGGGGACCGGAAACATTGACCTTATATGT GACCCCTGAAGTTACAGAATGAATGGATCAGCAAGAGTAGGAGGCATCTGCTCTGATTTC CACCTTGTTTTCCTGGCTTGGGCTCTGAGGGCACCTGGACAGAGGATTAAATGAACTAGT TGGGGGCAGGTCCCTCCAACCACCAGCACCAATCCCTGGGCTCTGAGGAATCACAAAAAC ACTTTTTATATAAAATAAAATTATACCTAGCAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACTTCAGGTACCAGCGTGCCCAGCGTCCCGCCGTCCCCCCGCTGGCGTCCGGGGCGCC GCCTCTGTGTAGGGCGGGCGAGGAGGCAGTCGAGGCGGAGCGGATGGCTGCACTGAGGGC GGGGCGGGGTGCAGGCTGGAGCCTTCGTGGATGGCGGGCTTTGGCGGGGGTTCGCTGGGG AAAGGGACCCCTGTTGACCCCTGACCTCCGAGCCCTGCTGACGTCAGGAACTCCTGACCC GCGGGCCGGAGTGACTTATGGGACCCCTGGCTTCAGGGCCCGCTTGTCTGTGGGGGTCCC CGAACCACGAACATGTCTGACGTCGGGGACTTCGGATCCTCGAGTAGGGGATCCCCGGAC CCGGGAAGACTCAGGGACCCCTGGAAACCGTCCGCGCCAGTGGCTGGCGGTGGCGCTAGG CGCTGGAGGGGCAGTGCTGTTGTTGTTGTGGGGCGGGGGGCGGGGGCCCCCGGCCGTCCT CGCCGCAGTCCTTAGCTCGCCGCCCACGTCTCCCAGGAGCCAGTACAACTTCATCGCGGA CGTGGTGGAGAAGACGGCCCCTGCCGTGGTTTATATCGAGATCTTGGGCCGGCACCCTTT CTCGGGCCGCGAAGTACCTATCTCCAATGGCTCAGGATTCGTGGTGGCTAGTGACGGGCT CATTGTTACCAACGCTCATGTGGTGGCTGATCGGCGCCGAGTTCGGGTGAGGCTGCCCAG TGGCGACACGTATGAGGCCGTGGTCACAGCTGTGGATCCCGTGGCAGACATTGCCACGCT GAGGATTCAGACCAAGGAGCCTCTCCCCACACTGCCCCTGGGACGCTCAGCCGACGTCCG GCAAGGGGAGTTTGTTGTTGCCATGGGAAGTCCCTTTGCGCTGCAGAACACGATCACATC TGGCATTGTCAGCTCTGCTCAGCGTCCAGCCAAAGACCTGGGCCTTCCCCAAACCAATGT GGAATACATCCAGACTGATGCAGCTATTGATTTTGGAAACTCTGGAGGTCCCCTGGTTAA CCTGGATGGGGAGGTGATTGGGGTGAATACCATGAAGGTCACAGCTGGCATCTCCTTTGC CATCCCTTCTGATCGTCTTCGAGAGTTTCTGCGACGTGGAGAAAAGAAGAATTCCTGGTT TGGGAACAGTGGGTCCCAGCGCCGCTACATTGGGGTGATGATGCTGACCCTGACTCCCAG CATCCTTGCTGAACTACAGCTTCGAGAACCAAGCTTTCCTGATGTTCAGCATGGTGTGCT CATCCATAAAGTCATCCTGGACTCCCCTGCACACCGGGCTGGTCTACGGCCAGGCGATGT GATCTTAGCCATTGGGGAGCAGCTGGTACAAAACGCTGAAGATATTTATGAAGCTGTTCG AACCCAATCCCAGCTGGCAGTGCGGATCCGGCGGGGACCGGAAACATTGACCTTATATGT GACCCCTGAAGTTACAGAATGAATGGATCAGCAAGAGTAGGAGGCATCTGCTCTGATTTC CACCTTGTTTTCCTGGCTTGGGCTCTGAGGGCACCTGGACAGAGGATTAAATGAACTAGT TGGGGGCAGGTCCCTCCAACCACCAGCACCAATCCCTGGGCTCTGAGGAATCACAAAAAC ACTTTTTATATAAAATAAAATTATACCTAGCAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 119-318, + strand, RNAz p=0.976756 | |
| 1375-1490, - strand, RNAz p=0.569535 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 119-318, + strand, RNAz p=0.976756 | |
| 1375-1490, - strand, RNAz p=0.569535 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_032603, - |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 1-592, gnl|bosTau2|chr11 (7760713-7760104) | |
| 1-592, gnl|Hg17|chr2 (74668685-74669295) | |
| 1-592, gnl|Mm7|chr6 (83079957-83079354) | |
| 795-991, gnl|bosTau2|chr11 (7759687-7759491) | |
| 795-991, gnl|Hg17|chr2 (74669691-74669887) | |
| 795-991, gnl|Mm7|chr6 (83078959-83078763) | |
| 1024-1142, gnl|bosTau2|chr11 (7758996-7758876) | |
| 1024-1142, gnl|canFam2|chr17 (51680984-51680860) | |
| 1024-1142, gnl|danRer3|chr13 (9313751-9313877) | |
| 1024-1142, gnl|echTel1|scaffold_295249 (7370-7246) | |
| 1024-1142, gnl|fr1|chrUn (119564992-119564876) | |
| 1024-1142, gnl|galGal2|chrUn (122303112-122303239) | |
| 1024-1142, gnl|hg17|chr2 (74670366-74670490) | |
| 1024-1142, gnl|Hg17|chr2 (74670378-74670498) | |
| 1024-1142, gnl|loxAfr1|scaffold_8565 (19852-19976) | |
| 1024-1142, gnl|mm7|chr6 (83078252-83078128) | |
| 1024-1142, gnl|Mm7|chr6 (83078238-83078118) | |
| 1024-1142, gnl|monDom2|scaffold_10 (48132265-48132141) | |
| 1024-1142, gnl|oryCun1|scaffold_199093 (94881-94777) | |
| 1024-1142, gnl|panTro1|chr12 (77074775-77074899) | |
| 1024-1142, gnl|rheMac2|chr13 (74761918-74762042) | |
| 1024-1142, gnl|rn3|chr4 (117508231-117508107) | |
| 1024-1142, gnl|tetNig1|chr10 (5684498-5684390) | |
| 1024-1142, gnl|xenTro1|scaffold_190 (1043473-1043568) | |
| 1296-1653, gnl|bosTau2|chr11 (7757885-7757528) | |
| 1296-1653, gnl|Hg17|chr2 (74671601-74671957) | |
| 1296-1653, gnl|Mm7|chr6 (83077069-83076716) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-592, gnl|bosTau2|chr11 (7760713-7760104) | |
| 1-592, gnl|Hg17|chr2 (74668685-74669295) | |
| 1-592, gnl|Mm7|chr6 (83079957-83079354) | |
| 795-991, gnl|bosTau2|chr11 (7759687-7759491) | |
| 795-991, gnl|Hg17|chr2 (74669691-74669887) | |
| 795-991, gnl|Mm7|chr6 (83078959-83078763) | |
| 1024-1142, gnl|bosTau2|chr11 (7758996-7758876) | |
| 1024-1142, gnl|canFam2|chr17 (51680984-51680860) | |
| 1024-1142, gnl|danRer3|chr13 (9313751-9313877) | |
| 1024-1142, gnl|echTel1|scaffold_295249 (7370-7246) | |
| 1024-1142, gnl|fr1|chrUn (119564992-119564876) | |
| 1024-1142, gnl|galGal2|chrUn (122303112-122303239) | |
| 1024-1142, gnl|hg17|chr2 (74670366-74670490) | |
| 1024-1142, gnl|Hg17|chr2 (74670378-74670498) | |
| 1024-1142, gnl|loxAfr1|scaffold_8565 (19852-19976) | |
| 1024-1142, gnl|mm7|chr6 (83078252-83078128) | |
| 1024-1142, gnl|Mm7|chr6 (83078238-83078118) | |
| 1024-1142, gnl|monDom2|scaffold_10 (48132265-48132141) | |
| 1024-1142, gnl|oryCun1|scaffold_199093 (94881-94777) | |
| 1024-1142, gnl|panTro1|chr12 (77074775-77074899) | |
| 1024-1142, gnl|rheMac2|chr13 (74761918-74762042) | |
| 1024-1142, gnl|rn3|chr4 (117508231-117508107) | |
| 1024-1142, gnl|tetNig1|chr10 (5684498-5684390) | |
| 1024-1142, gnl|xenTro1|scaffold_190 (1043473-1043568) | |
| 1296-1653, gnl|bosTau2|chr11 (7757885-7757528) | |
| 1296-1653, gnl|Hg17|chr2 (74671601-74671957) | |
| 1296-1653, gnl|Mm7|chr6 (83077069-83076716) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| fbs (0.350693) | |
| cty (0.31224) | |
| sme (0.305437) | |
| pla (0.267344) | |
| cmu (0.186393) | |
| sin (0.174948) | |
| cje (0.165235) | |
| nco (0.161734) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ste (0.135208) | |
| ova (0.129132) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.350693) | |
| cty (0.31224) | |
| sme (0.305437) | |
| pla (0.267344) | |
| cmu (0.186393) | |
| sin (0.174948) | |
| cje (0.165235) | |
| nco (0.161734) | |
| eli (0.151814) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| cst (0.140036) | |
| nca (0.136874) | |
| ste (0.135208) | |
| ova (0.129132) | |
| ecc (0.115035) | |
| eje (0.0988338) |